Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1670 129 1e-24 seq9446 118 2e-21 seq4780 96.9 7e-15 seq359 96.9 7e-15 seq6668 95.1 2e-14 seq1225 93.3 8e-14 seq8446 87.8 4e-12 >seq1670 Length=4706099 Score = 129 bits (142), Expect = 1e-24 Identities = 172/235 (73%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 2974251 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 2974193 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| || || ||||||||||| | ||| || |||||||| | Sbjct 2974192 ACAAAGTACGTCCATCTTCCAGGTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 2974133 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| | ||| || | ||| | Sbjct 2974132 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAA 2974073 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCA-TTTTAT 192541 | || || || ||||| || || || | ||||| | || ||||||| |||||| Sbjct 2974072 CCTCGAGGGTGATGGTCTTCCCCGTGAGGGTTTTCACGAAAATCTGCACTTTTAT 2974018 >seq9446 Length=14842378 Score = 118 bits (130), Expect = 2e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 8610032 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 8609974 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || || |||| | Sbjct 8609973 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAG 8609914 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| || || || || || |||||||| ||| | || || | ||| | Sbjct 8609913 GAATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATTCGAGGGTTCAA 8609854 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || || | ||||| | || ||||||||||| Sbjct 8609853 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 8609802 >seq4780 Length=17887985 Score = 96.9 bits (106), Expect = 7e-15 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 192311 CACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATA 192370 |||| | ||| | ||||| ||||| | ||||| |||||| ||||| || ||| | Sbjct 5698917 CACCACGAAGTCTCAATACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAAA-- 5698974 Query 192371 ATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTA 192430 || ||| |||| |||| ||| || ||||||||||| |||||| || |||| || | Sbjct 5698975 --GTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCCGACCAGGAGGAA 5699032 Query 192431 TTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTT 192490 ||||||| ||| | || || || | |||||| ||| | || || | ||| | | Sbjct 5699033 TTCCTTCCTTAACCTGGATCTTGGCCTATACATTTTCTATTGTGTCCGAGGGTTCACCCT 5699092 Query 192491 CTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || ||||| || || || | ||| | | || ||||||||||| Sbjct 5699093 CGAGGGTGATGGTCTTCCCTGTAAGGGTTATCACGAAAATCTGCATTTT 5699141 >seq359 Length=9844545 Score = 96.9 bits (106), Expect = 7e-15 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 ||| | ||||| ||| ||| || || | || ||||| || || | | |||| |||| || Sbjct 8207732 ATGAAGAGTAGACTCCTTTTGA-ATGTG-TAGTCAGACAAAGTACATCCATCCTCCAGTT 8207789 Query 192392 G--TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTAT 192449 | ||| | ||||||||| | ||| || |||||| || |||||||| ||||| || || Sbjct 8207790 GCTTTTGCTAGCAAAGATCAGTCTTTGCCCATCAGGAGGAATTCCTTCCTTATCCTGGAT 8207849 Query 192450 TTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACC 192509 || |||||||| || | | |||||| | ||| || || || || ||||| || || Sbjct 8207850 CTTGGCCTTTACATTT-TTGTCGTATCTGAGGGTTCAACCTCGAGGGTGATGGTCTTCCC 8207908 Query 192510 AGTTAATGTTTTAATAAATATCTGCATTTT 192539 || | ||||| | || ||||||||||| Sbjct 8207909 TGTAAGGGTTTTCGTGAAAATCTGCATTTT 8207938 >seq6668 Length=25972781 Score = 95.1 bits (104), Expect = 2e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 192340 GTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACC 192398 |||| ||| ||| || || || | ||||| || || ||| | || |||| ||| | || Sbjct 3822644 GTAGGCTCCTTTTGA-ATGTTGCAGTCAGACAAAGTACGTCCGTCTTCCAGTTGCTCGCC 3822586 Query 192399 AGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 192458 ||||||||| | ||| || |||||||| || |||||||| ||||| || || || || Sbjct 3822585 AGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTT 3822526 Query 192459 TACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 192518 |||||| | | |||||| | ||| | || || || || || || || ||| || Sbjct 3822525 TACATTTTCTGCCGTATCTGAGGGTTCAATCTCAAGGGTGATAGTCTTCCCCCTTAGGGT 3822466 Query 192519 TTTAATAAATATCTGCATTTT 192539 ||| | || ||||||||||| Sbjct 3822465 TTTCACGAAAATCTGCATTTT 3822445 >seq1225 Length=21025059 Score = 93.3 bits (102), Expect = 8e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||||||| || ||||||||||| | ||| || |||||||| || |||||||| | Sbjct 9810188 CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCT 9810129 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 |||| || || || |||||||| | | | | | | ||| || || || || | Sbjct 9810128 TATCCTGGATATTGGCCTTTACATTTTCTGTTGTGTTCAAGGGTTCAACCTCAAGGGTGA 9810069 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 |||| || || || | ||||| | ||| |||||||||| Sbjct 9810068 TGGTCTTCCCTGTAAGGGTTTTCACAAAAATCTGCATTT 9810030 >seq8446 Length=17995230 Score = 87.8 bits (96), Expect = 4e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 4537441 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 4537499 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || | | |||| |||| ||| || ||||||||||| || || ||| |||| | Sbjct 4537500 ACAAAGTCCATGCATCTTCCAGTTGCTTGCCAGCAAAGATCCCCCTTTGCTGAGCAGGAG 4537559 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || | |||||||| ||| | ||| || | ||| | Sbjct 4537560 GAATTCCTTCCTTATCCTGGATCTCGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAA 4537619 Query 192488 CTTCTAGAGTAATGG 192502 | | || || |||| Sbjct 4537620 CATGGAGGGTGATGG 4537634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984357231344550