Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq9446 118 2e-21 seq4780 104 4e-17 seq6668 100 5e-16 seq359 89.7 9e-13 seq673 86.0 1e-11 >seq9446 Length=14842378 Score = 118 bits (130), Expect = 2e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 8610041 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 8609982 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || | Sbjct 8609981 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAG 8609922 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 |||| || |||||||| || || || || || |||||||| ||| |||| || Sbjct 8609921 AGCAGGAGGAATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATTCGA 8609862 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 8609861 GGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 8609802 >seq4780 Length=17887985 Score = 104 bits (114), Expect = 4e-17 Identities = 167/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || | |||| | ||||| ||||| ||||| | ||||| |||||| |||||| Sbjct 5698906 TTTCTTAGCAGCACCACGAAGTCTCAATACAAAATGAAGAGTAGACTCTTTTTGAATATT 5698965 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || |||| ||| | || |||| ||| || |||||||| || |||||| | Sbjct 5698966 GTAGTC----AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCCG 5699021 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 |||| || |||||||| ||| | || || || | |||||| ||| || || || Sbjct 5699022 ACCAGGAGGAATTCCTTCCTTAACCTGGATCTTGGCCTATACATTTTCTATTGTGTCCGA 5699081 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || || || ||||| || || || | ||| | | ||| ||||||||||| Sbjct 5699082 GGGTTCACCCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTATCACGAAAATCTGCATTTT 5699141 >seq6668 Length=25972781 Score = 100 bits (110), Expect = 5e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || | |||| | ||||| || | | ||| | |||| ||| || ||| || Sbjct 3822684 TTTCTTAGCAACACCACAAAGTCTCAACAAAAGATGAAGGGTAGGCTCCTTTTGAATGTT 3822625 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 | || || |||| ||| |||| |||| ||| | |||||||| || | ||| || || Sbjct 3822624 GCAGTCAGACAAAGTACGTCCGTCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTG 3822565 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| | |||||||| Sbjct 3822564 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGA 3822505 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || || || || || || || ||| ||||| | ||| ||||||||||| Sbjct 3822504 GGGTTCAATCTCAAGGGTGATAGTCTTCCCCCTTAGGGTTTTCACGAAAATCTGCATTTT 3822445 >seq359 Length=9844545 Score = 89.7 bits (98), Expect = 9e-13 Identities = 167/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| |||| || | | ||| | ||||| ||| || ||| | Sbjct 8207699 TTTCTTAGCACCACCATGAAGTGTCAACGCAAGATGAAGAGTAGACTCCTTTTGAATGTG 8207758 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTG--TTTACCAGCAAAAATTAATCTCTGT 171950 || || || |||| | | | || |||| ||| ||| | |||||| || | ||| || Sbjct 8207759 -TAGTCAGACAAAGTACATCCATCCTCCAGTTGCTTTTGCTAGCAAAGATCAGTCTTTGC 8207817 Query 171951 TGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCT 172010 ||||| || |||||||| ||||| || || || |||||||| || | |||||| Sbjct 8207818 CCATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTT-TTGTCGTATCT 8207876 Query 172011 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || | ||| || || || || ||||| || || || | ||||| |||| ||||||||| Sbjct 8207877 GAGGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCGTGAAAATCTGCATT 8207936 Query 172071 TT 172072 || Sbjct 8207937 TT 8207938 >seq673 Length=10811 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 171871 AAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTAC 171930 |||| | ||| || ||| ||||| || || |||| | | |||| |||| ||| || | Sbjct 6442 AAGTGGACTCCTTTTGAATGTTATAGTCAGACAAAGCACATCCGTCTTCCAGTTGCTTGC 6501 Query 171931 CAGCAAAAATTAATCT---CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||| || | ||| || |||||||| | |||||||| ||||| || || || Sbjct 6502 CAGCAAAGATCAGTCTTTACTACTGGTCAGGAGAAATTCCTTCCTTATCCTGGATCTTGG 6561 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| | | |||| | | ||| || || |||| |||| ||| | | | Sbjct 6562 CTTTTACATT--TCCTTGTATTCAAGGGTTCAACCTCAAGAGCGATGGCTTTCTCCATAA 6619 Query 172048 ATGTTTTAATGAATATCTGCATTTT 172072 | | | | ||||| ||||||||||| Sbjct 6620 AGGGTGTTATGAAAATCTGCATTTT 6644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905025878891400