Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1670 120 3e-22 seq7002 116 3e-21 seq7446 109 5e-19 seq3 109 5e-19 seq9446 107 2e-18 seq6668 96.9 3e-15 seq758 96.9 3e-15 seq1225 95.1 1e-14 seq8446 87.8 2e-12 seq1299 87.8 2e-12 seq547 86.0 6e-12 seq359 86.0 6e-12 seq1226 84.2 2e-11 >seq1670 Length=4706099 Score = 120 bits (132), Expect = 3e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 24705 TGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCG 24764 ||||||| || | ||||| || || || || || || || ||||| || ||| || | | Sbjct 2974025 TGCAGATTTTCGTGAAAACCCTCACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCGG 2974084 Query 24765 ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAAC 24824 | || |||||| ||||| |||||||| || || |||||||| ||||| ||||| | Sbjct 2974085 ATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGC 2974144 Query 24825 AACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACA 24884 || | |||||||||| || || || ||||| ||| | | |||| || || || | Sbjct 2974145 AAAGACTGATCTTTGCTGGCAAGCACCTGGAAGATGGACGTACTTTGTCTGACTACAATA 2974204 Query 24885 TTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||| || || || || | |||||| || | || || || Sbjct 2974205 TTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 2974250 >seq7002 Length=12659153 Score = 116 bits (128), Expect = 3e-21 Identities = 170/239 (71%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| || || ||| | || || ||| Sbjct 9467266 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTCAAGGTCGAGCCCAGT 9467207 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||| | ||| || |||||||| || || || || || || || Sbjct 9467206 GACACCATGAGAATGTCAAAGCCAAA-ATTCAAGACAAGGAGGGTATCCCACCTGACCAG 9467148 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| |||||||| ||||||||||| ||| | | | ||||| || ||| Sbjct 9467147 CAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAAC 9467088 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 || || || || || || || ||| |||||||||| |||| || ||| | |||||| Sbjct 9467087 ATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGGCATTATTGAGCC 9467029 >seq7446 Length=17224310 Score = 109 bits (120), Expect = 5e-19 Identities = 170/240 (71%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || | || ||||| || || || || || || ||| Sbjct 13347110 ATGCAGATCTTTGTGAAGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCGAGCCCAGT 13347051 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||| || |||||||| || || || || || || || Sbjct 13347050 GACACCATTGAGAACGTCAAAGCCAAA-ATTCAAGACAAGGAGGGTATCCCACCTGACCA 13346992 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||| |||||| | ||||||||||| ||| | | | ||||| || || Sbjct 13346991 GCAGCGTCTGATATTTGCCAGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAA 13346932 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||| ||| || || || || ||| |||||||||| |||| || ||| | |||||| Sbjct 13346931 CATCCAA---GAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGGCATTATTGAGCC 13346875 >seq3 Length=16319837 Score = 109 bits (120), Expect = 5e-19 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || || || || || || || || || || || || Sbjct 4626189 ACAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 4626248 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || |||||||||||| || ||||| || |||||||| Sbjct 4626249 AGTGACACCATTGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATTCCTCCCGAC 4626308 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | ||||||||||||| || |||||||| ||| | | | | |||| || || Sbjct 4626309 CAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 4626368 Query 24881 AACATTCAAAAGGAATCGACACTACAC--TTGGTGTTGC 24917 ||||| || || || || || || ||| |||||| || Sbjct 4626369 AACATCCAGAAAGAGTCCACCCTGCACCTATGGTGTCGC 4626407 Score = 102 bits (112), Expect = 7e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 ||||||||| ||||| ||||| || ||||| || || || | ||||||||||| ||||| Sbjct 4628484 AAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGTTGATCTTTGCTGGGAA 4628543 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 ||||||||| ||| | | | |||| || || ||||| || || || || || || || Sbjct 4628544 ACAGCTGGAAGATGGACGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCA 4628603 Query 24907 CTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| |||| ||| | || || Sbjct 4628604 CTTGGTCCTGCGCTTGAGGGGGGG 4628627 >seq9446 Length=14842378 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || || || || || ||||| || ||| || | Sbjct 8609805 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCG 8609864 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 | || |||||| ||||| |||||||| || || |||||||| ||||| | || Sbjct 8609865 AATACGATAGAAAATGTAAAGGCCAAGATCCAGGAGAAGGAAGGAATTCCTCCTGCTCTG 8609924 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||||| || || || ||||| ||| | | |||| || || || Sbjct 8609925 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAT 8609984 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || || | |||||| || | || || || Sbjct 8609985 ATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 8610031 >seq6668 Length=25972781 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| |||| || || ||||| || || || | ||| || | Sbjct 3822448 ATGCAGATTTTCGTGAAAACCCTAAGGGGGAAGACTATCACCCTTGAGATTGAACCCTCA 3822507 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | ||||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 3822508 GATACGGCAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 3822567 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||||| || | || ||||| || | | |||| || | ||| Sbjct 3822568 CAAAGACTGATCTTTGCTGGCGAGCAACTGGAAGACGGACGTACTTTGTCTGACTGCAAC 3822627 Query 24884 ATTCAAAAGGA 24894 ||||||||||| Sbjct 3822628 ATTCAAAAGGA 3822638 >seq758 Length=2790677 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || ||||| || || || || || | ||| || ||| Sbjct 2565445 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCT-GGAGTGGAGCCCAGT 2565503 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| || |||||||| || || ||||| || Sbjct 2565504 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCCGACCAG 2565563 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || |||||||| ||| | | | || || || ||| Sbjct 2565564 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 2565623 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| |||| |||| || | || ||| Sbjct 2565624 ATCCAGAAGGAGTCAACCCTGCACCTGGTCCTGCGCCTGAGGGGTGGC 2565671 >seq1225 Length=21025059 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/197 (70%), Gaps = 11/197 (6%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || || || || || || || || ||| || Sbjct 9810032 ATGCAGATTTTTGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTTGAACCCTTG 9810091 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| ||||| ||||| || ||||| || || |||||||| ||||| ||||| Sbjct 9810092 AACACAACAGAAAATGTAAAGGCCAATATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 9810151 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||||| || || || |||| ||| ||| || || ||| Sbjct 9810152 CAAAGACTGATCTTTGCTGGCAAGCAATTGGAAGAT-----------GTCTGACTACAAC 9810200 Query 24884 ATTCAAAAGGAATCGAC 24900 ||||||||||| || || Sbjct 9810201 ATTCAAAAGGAGTCTAC 9810217 >seq8446 Length=17995230 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 24740 ATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGAC 24799 || || ||| | || ||| || | || || |||||| ||||| ||||||| || Sbjct 4537632 ATCACCCTCCATGTTGAACCCTCGGATACGATAGAAAATGTAAAGGCCGAGATCCAGGAT 4537573 Query 24800 AAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || |||||||| ||||| | ||| ||| | ||||||||| || || || ||||| ||| Sbjct 4537572 AAGGAAGGAATTCCTCCTGCTCAGCAAAGGGGGATCTTTGCTGGCAAGCAACTGGAAGAT 4537513 Query 24860 TCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 | | | |||| || || || ||||||||||| || || || || | |||||| || Sbjct 4537512 GCATGGACTTTGTCTGACTACAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGA 4537453 Query 24920 TTGCGCGGAGG 24930 | || || || Sbjct 4537452 CTTCGTGGTGG 4537442 >seq1299 Length=15376 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/215 (69%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || || | || ||| Sbjct 1724 GATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGATTGAGCCCAG 1783 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGA-ATACCTCCCGATC 24821 ||||| | | | || ||| || || |||||||| || ||| || || || || | Sbjct 1784 TGACACCATTTAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGATATCCCACCTGACC 1843 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || ||| |||| |||| |||||||||||||||||| | | | |||| || | Sbjct 1844 AGCAGCGTCTGATACTTGCTGGGAAACAGCTGGAGGATGGCCGCACTCTCTCAGGCTACA 1903 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 |||| || || || || || ||| || ||||| || Sbjct 1904 ACATCCAGAAAGAGTCCACCCTAAACCTGGTGCTG 1938 >seq547 Length=9034655 Score = 86.0 bits (94), Expect = 6e-12 Identities = 163/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || || || | ||| Sbjct 8022647 GATGCAGATCTTTGTGAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCAAGCCCAG 8022706 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| || || ||| || || |||||||| || || || || || || || Sbjct 8022707 TGACACCAATGAGGATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCA 8022766 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | |||| ||||||| ||||||||||||||| ||| | ||||| || | Sbjct 8022767 GCAGCATCTGATACTTGCCGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTACGA 8022826 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||| | || || || || ||| ||||| |||| |||| || ||| |||||||| Sbjct 8022827 CATCTGGGAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGGCATTACTGAGCC 8022886 >seq359 Length=9844545 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || || || || || ||||| || ||| || | Sbjct 8207935 ATGCAGATTTTCACGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCCTCA 8207876 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | ||| | |||| |||||||| || || |||||||| ||||| ||| Sbjct 8207875 GATACGACAAAAATG-TAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATGGG 8207817 Query 24824 CAACGTTTGATCTTTGCCGGGAAA--CAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 ||| | |||||||||| | ||| || ||||||||| | | |||| || || | Sbjct 8207816 CAAAGACTGATCTTTGCTAGCAAAAGCAACTGGAGGATGGATGTACTTTGTCTGACTACA 8207757 Query 24882 ACATTCAAAAGGAATCGACACTACA-CTTG 24910 |||||||||||| || || || || |||| Sbjct 8207756 -CATTCAAAAGGAGTCTACTCTTCATCTTG 8207728 >seq1226 Length=1830524 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||| | | || || || || || | ||| || || | || || | ||| Sbjct 1001238 ATGCAGATCTCTGTAAAGACCCTCACAGGAAGAACCATCACCTTTGAGGTCCAGCCCAGT 1001297 Query 24764 GACAC-AGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| ||| |||| || ||| |||||||| ||||| || || || || || || || Sbjct 1001298 GACACCAGT-GAAAATGTCAAAGCCAAGATCCATGACAAGGAGGGCATCCCACCTGACCA 1001356 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATA 24881 || | | |||| |||| || |||||| |||||||| | | || | |||||||||| Sbjct 1001357 GCAGCATCTGATATTTGTGGGCAAACAGTTGGAGGATG-GCCACACTCTTTCAGATTATA 1001415 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||| || || || || || || || ||||| Sbjct 1001416 ACATCCAGAAAGAGTCCACCCTGCAGGTGGTG 1001447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449842864333240