Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1670 105 5e-18 seq6668 104 2e-17 seq9446 102 6e-17 seq1470 91.5 1e-13 seq1225 91.5 1e-13 seq758 87.8 1e-12 seq1226 86.0 5e-12 seq4780 84.2 2e-11 >seq1670 Length=4706099 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| || || || | | || || ||| Sbjct 2974236 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 2974177 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || ||||||||| | |||| |||||||||||| || ||||| || || || || Sbjct 2974176 TTCCAGGTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2974117 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || |||| || || || || || || Sbjct 2974116 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 2974057 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || ||||||| ||| Sbjct 2974056 CTTCCCCGTGAGGGTTTTCACGAAAATCTGCACTTT 2974021 >seq6668 Length=25972781 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| || | || ||||||||||| | || | | || || || || ||||| Sbjct 3822651 ATGAAGGGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCGTCTTCCAGTTG 3822592 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 | ||||||| | |||| |||||||||||| || ||||| || || || || || | || Sbjct 3822591 CTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 3822532 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| ||||| | || || || |||| | ||||| || ||||| || || | Sbjct 3822531 GGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAATCTCAAGGGTGATAGTCTTCCCCCT 3822472 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 || |||||| || || ||||||||||| Sbjct 3822471 TAGGGTTTTCACGAAAATCTGCATTTT 3822445 >seq9446 Length=14842378 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| || || || | | || || ||| Sbjct 8610017 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 8609958 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||||||| || | || ||||| || || || || Sbjct 8609957 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAGGAATTCCTTCCTTCTC 8609898 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || | || |||| || || || || || || Sbjct 8609897 CTGGATCTTGGCCTTTACATTTTCTATCGTATTCGAGGGTTCAACCTCGAGGGTGATGGT 8609838 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || ||||||||||| Sbjct 8609837 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 8609802 >seq1470 Length=5179915 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 29573 GCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAAT 29632 |||| |||| || | ||||| | |||||| ||||| || || | | |||| || Sbjct 4406598 GCAGAACCAGGTGCATGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCAGCCAT 4406657 Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692 | || || || ||||||||| |||||| | ||||| || || || ||||||||||||| Sbjct 4406658 CCTCCAGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCTTTGT 4406717 Query 29693 CTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 |||| |||||| | ||||| | | || |||| | | || || ||||| | || Sbjct 4406718 CTTG-AATTTTGGCTTTGAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGATGATG 4406776 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCA 29785 || ||||| || | ||| | ||||| | ||||| Sbjct 4406777 GTCTTGCCCGTGAGGGTCTCCACAAAGAGCTGCA 4406810 >seq1225 Length=21025059 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| ||||||||| | |||| |||||||||||| || ||||| || || || Sbjct 9810187 ATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 9810128 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | || || ||| ||||| |||| | |||| || ||||| || || Sbjct 9810127 ATCCTGGATATTGGCCTTTACATTTTCTGTTGTGTTCAAGGGTTCAACCTCAAGGGTGAT 9810068 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTT 29788 || || || || | |||||| ||||| |||||||||| Sbjct 9810067 GGTCTTCCCTGTAAGGGTTTTCACAAAAATCTGCATTT 9810030 >seq758 Length=2790677 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29587 AGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTG 29646 || || || ||||| || ||||| || || | || ||||| ||| || || || ||| Sbjct 2565187 AGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTG 2565128 Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 || ||| | || | || ||||| || || ||||| || || || || || | ||| Sbjct 2565127 CCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCC 2565068 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || ||| |||| | |||||| | || || ||||| || || || ||||| || | | Sbjct 2565067 TTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGG 2565008 Query 29767 GTTTTAACAAATATCTGCATTTT 29789 || || || || ||||||||||| Sbjct 2565007 GTCTTCACGAAGATCTGCATTTT 2564985 >seq1226 Length=1830524 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||||| || || ||||| ||||| || ||||||||||| | || ||| | ||| Sbjct 1001449 AGCACCACCTGCAGGGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTGTGGCCATCC 1001390 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||||| || |||||| ||||| || || || || ||||| ||||| Sbjct 1001389 TCCAACTGTTTGCCCACAAATATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCA 1001330 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || ||||||| |||| |||||| | | || |||| || || ||| Sbjct 1001329 TGGATCTTGGCTTTGACATTTTCACTGGTGTCACTGGGCTGGACCTCAAAGGTGATGGTT 1001270 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || | ||| || ||| | |||||||| Sbjct 1001269 CTTCCTGTGAGGGTCTTTACAGAGATCTGCAT 1001238 >seq4780 Length=17887985 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || |||||||| || || ||||||||||| || || || || || || ||| || Sbjct 5698934 ACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCA--AA--GTACGTCCATCTTCC 5698989 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 ||||| ||||||||| | ||| ||| ||| || | || ||||| || || || | || Sbjct 5698990 AGTTGCTTGCCAGCAAAGATCGGTCTCTGCCGACCAGGAGGAATTCCTTCCTTAACCTGG 5699049 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || | ||| |||||| ||||| || |||| | || || || || || || Sbjct 5699050 ATCTTGGCCTATACATTTTCTATTGTGTCCGAGGGTTCACCCTCGAGGGTGATGGTCTTC 5699109 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || | |||| | || || ||||||||||| Sbjct 5699110 CCTGTAAGGGTTATCACGAAAATCTGCATTTT 5699141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385173504937353