Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq2224 143 2e-29 seq337 89.7 5e-13 >seq2224 Length=56261439 Score = 143 bits (158), Expect = 2e-29 Identities = 725/1135 (64%), Gaps = 59/1135 (5%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | |||| ||| || ||||| ||| | ||| |||| | || ||| | || Sbjct 31697505 ATGCCTTCTATGTGGCAGACCTGGGAGACATTCTAAAGAAACATCTGAGGTGGTTAAACA 31697564 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| |||| || ||||| || || || | || | || | || | Sbjct 31697565 CTCTCCCTCGTGTCACCCCCTTTTATGCAGTCAAATGTAATGATAGCAAAGCCA-TCATG 31697623 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 |||||||| ||||| | || || ||||||||||| || ||| || || ||||| Sbjct 31697624 AAGACCCTTGCTGCTGTGGGGACAGGATTTGACTGTGCTAGCAAGACTGAAATACAGTTG 31697683 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | |||| | || | |||| ||||| | | ||| ||||||||||| || Sbjct 31697684 GTGCAGAGTCTGAGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCTTGTAAACAAGTA 31697743 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || | | |||||| ||| | | |||||| | ||||||||||||||||||||| Sbjct 31697744 TCTCAAACTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTTGATAGTGAAGTT 31697803 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||| | | ||| ||| | || | | || ||| |||| || ||||| Sbjct 31697804 GAGTTGATGAAAGTTGCCAGAGCACATCCAAAAGCAAAGTTGGTTTTGCGGATTGCCACT 31697863 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | || ||||| || || || || | | | ||| Sbjct 31697864 GATGATTCCAAAGCAGTCTGTCGTCTCAGTGTTAAATTCGGTGCCACGCTCAGAAATAGC 31697923 Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683 | ||| | || ||| ||| | | | || || | || |||||||||||| Sbjct 31697924 AGGCTCCTTTTGGAAAGGGCAAAAGAGGTGAATATCGATGTTGTTGGTGTCAGCTTCCAC 31697983 Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743 || || |||||||| | ||| | || | | | | || || |||| || | | Sbjct 31697984 GTAGGAAGTGGCTGTACCGATCCTGAGACCTTCGTGCAGGCAATCTCTGATACCCGCTGT 31698043 Query 20744 GCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGCG 20801 | ||||||| | || ||||| | || || |||||| || | |||||||| || | Sbjct 31698044 GTTTTTGACATGGG--GGCTGAGGTTGGTTTCAGCATGTATCTGCTTGATATTGGCGGTG 31698101 Query 20802 GCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACAT-TGCAGAAGTCATT 20857 ||||| || ||||| |||| || ||| | ||||| || || ||| | | || Sbjct 31698102 GCTTT-CCTGGATC--TGAGGATGTGAAGCTTAAATTTGAAGAGATCACCAGCA-TAATC 31698157 Query 20858 AACGCGGCCTTGGAAAGGCATTTTC---CAGATGATGCCAACCTGACAATTATTGGTGAA 20914 ||| | || ||||| || |||||| |||| || ||| ||| || | | | Sbjct 31698158 AACCCAGCGTTGGACAGATATTTTCTGTCAGACTCTG---GAGTGAGAATCATAGCTAAG 31698214 Query 20915 CCTGGCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTA--AAA 20972 |||||||| ||||| | | | || || | || | || || | | | || | | ||| Sbjct 31698215 CCTGGCAGATACTATGTTGCATCAGCTTTCACACTTGCGGTTAATATCATCTCCAAGAAA 31698274 Query 20973 AGTGTGTTGAAG--ACA------CTC-----CTGGAGA---------TAAAAAG---TTT 21007 | ||| || ||| ||| ||| || ||| | || || ||| Sbjct 31698275 ATTGTATTAAAGGAACAGACTGGCTCTGATGATGAAGATGAGTCGAGTGAACAGACCTTT 31698334 Query 21008 ATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCT 21067 |||| |||||| ||| |||| |||||||| ||||| |||||| | | | | || || Sbjct 31698335 ATGTGTTATGTGAATTATGGTGTCTATGGATCATTTAATTGCATACTGTATGATCACGCA 31698394 Query 21068 CGTCCTATGCCTATGCTGCTTAAAGAAAAACGCCTTGA--AGACA--AAG-ACTATGTTT 21122 | | | ||| | |||| ||||| | ||| | ||| | ||| | ||| | Sbjct 31698395 CATGTAAAGCCCCTTCTGC-AAAAGAGA----CCTAAACCAGATAAGAAGTATTATTCAT 31698449 Query 21123 CTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGC 21182 | ||||| ||||| || | || |||||| | ||| | |||||| |||| ||||| |||| Sbjct 31698450 CCAGCATATGGGGACCAATATGTGATGGCCTTGATCGGATTGTTGAGCGCTGTGACCTGC 31698509 Query 21183 CAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCA 21242 | || | || ||||| || ||| | | |||||||||||||||||||||| || | Sbjct 31698510 CCGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACA-CTGTTGCT 31698568 Query 21243 GCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCAG 21296 ||| | || || || || ||||||| | ||| | | ||||||| || |||| Sbjct 31698569 GCTGCCTCTACGTTCAATGGCTTCCAGAGGCCGGTGATCTACTATGTGATGTCAG 31698623 >seq337 Length=12475526 Score = 89.7 bits (98), Expect = 5e-13 Identities = 129/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || |||||| | ||| | |||||| |||| ||||| ||| Sbjct 7147592 TCCAGCATATGGGGACCAACATGTGATGGCCTTGATCGGATTGTTGAGCGCTGTGACCTG 7147651 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || || | || ||||| || ||| | | |||||||||||||| ||||||| || | Sbjct 7147652 CCCGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGTGCTTACA-CTGTTGC 7147710 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTCAG 21296 ||| | || || || || ||||| ||| || | || | | ||||||| || |||| Sbjct 7147711 TGCTGCCTCTACGTTCAATGGCTT-CCAGAGGCCGACGATCTACTATGTGATGTCAG 7147766 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 20372 GAGATTCAGTTACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCT 20431 || || ||||| |||| |||||||| || | |||| ||||| | | ||| |||||| Sbjct 7145028 GAAATACAGTTGGTGCAGAATCTGGGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCT 7145087 Query 20432 TGTAAGCAGCCTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTT 20491 ||||| || || || || | |||||| ||| | | |||||| | ||||||||||| Sbjct 7145088 TGTAAACAAGTATCTCAAATTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTT 7145147 Query 20492 GATAGTGAAG 20501 |||||||||| Sbjct 7145148 GATAGTGAAG 7145157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463489203883440