Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1558 219 5e-52 seq3558 194 2e-44 seq1514 145 9e-30 >seq1558 Length=28977278 Score = 219 bits (242), Expect = 5e-52 Identities = 606/921 (66%), Gaps = 11/921 (1%) Strand=Plus/Minus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 ||||| | | || ||| || | |||||||| || || | ||| ||| | || ||| Sbjct 7036439 TTATGCCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAAC 7036380 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || |||| ||| || || || ||||| || | || || | ||| || Sbjct 7036379 TTATTGGCAAACAAGTGGTGT---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCAAAA 7036323 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | |||||| || |||||||| || || ||| || || || |||| || | | ||| Sbjct 7036322 ATGCACACCGAGCGCACGTGGACTCCATCGCAGGGAGGGTAGGGGGCACCCTTGGAAACA 7036263 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || ||||| ||||||||||||| || ||||| | | || |||||||| || ||| Sbjct 7036262 TCACCCTCAAAGTATTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCG 7036203 Query 162307 TACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||| | ||| | | | | | || || || | || | ||||| | || ||||| Sbjct 7036202 TACTTATGG-CTGGCAGAAAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTGGCCCA 7036144 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 || | || || || || || || || | || ||||||||| |||| | || ||| Sbjct 7036143 GAGATACTCATCAGGGCTGTATGTGTCTTGCGCCCACTCCATAAACTTCTGGATGTTTTC 7036084 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 || | ||| | || || || ||| | || | |||||| || || |||||||| Sbjct 7036083 ATTCTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAA 7036024 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | ||| | | ||||| || |||| | || ||||| | | |||| | Sbjct 7036023 AAGAGGTGTTTCGAGCGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAGCTTTCCATT 7035964 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA-GACGGGTGTTCGGTCT 162604 |||||| | | | ||| ||||||| | |||| ||| | | | || || | Sbjct 7035963 AACGACCTCATACCGCTTTTTCCACCTTTCT-TCTTTATGGGATGGCATCCTCTCCGTTT 7035905 Query 162605 CTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAA 162664 | || ||||| ||| || ||| |||| | || || ||||| ||||| || | Sbjct 7035904 CCAGGCTGTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTTA 7035845 Query 162665 GGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACA 162724 ||||| || | || || ||||| || | || ||||| || | || | | | || | Sbjct 7035844 TAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATAGA 7035785 Query 162725 GATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCT 162784 | |||| | ||||| || || ||||| || |||||||| || || || || || |||| Sbjct 7035784 GGTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGACTCCATGATGCATAAACCACACTCT 7035725 Query 162785 CCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTG 162844 |||| | |||| ||||||||||| |||||| ||| | || |||||||| || | Sbjct 7035724 CCAATCGGCTGGCCACAAAGACATTACTGAAACAGGAAGCGATGCCCATCACTGCAGCTA 7035665 Query 162845 AGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTA 162902 | | ||| || | ||| | || || || | ||| || | ||||||||| || Sbjct 7035664 AATAGGAATC--CTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATATA 7035607 Query 162903 GATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGC 162962 |||||||||||| | || || | ||| || ||||| || || ||||| |||||||| || Sbjct 7035606 GATGGCCCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGC 7035547 Query 162963 TATGGGGAACTCAGCCTCCTC 162983 ||| || ||||| ||||| || Sbjct 7035546 TATTGGAAACTCTGCCTCTTC 7035526 >seq3558 Length=16468325 Score = 194 bits (214), Expect = 2e-44 Identities = 238/325 (73%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 |||||| || || |||| | || || || || || || ||||| ||||| || | || Sbjct 14725621 CATAGACCGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGAC 14725680 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| |||| | ||||| || || | || | ||| || Sbjct 14725681 ACATGTAACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGTGTTTTGGA 14725740 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || |||||||| | | |||||| || | |||||||| || || || || | Sbjct 14725741 GTCCCAGCTGGGTAATGTTTATCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGT 14725800 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||||| ||| |||||||||| ||||| ||| || | |||||||| || || | Sbjct 14725801 TCTCGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAA 14725860 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | | ||||| | | | |||| |||||||||||||| |||||||| |||| || | Sbjct 14725861 TCAGGACTTCCTGGGCATTTTGCAGAGAGCATCTTAAGGAAGCAGGAGTGTACAGCTGCT 14725920 Query 172071 CCCTTTCGTCTTGCGTTACCACCTG 172095 | ||||| || || || ||||| || Sbjct 14725921 CTCTTTCATCCTGGGTCACCACTTG 14725945 Score = 120 bits (132), Expect = 4e-22 Identities = 161/221 (73%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 171506 GTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTT 171565 ||||| | | ||| || |||||||||| ||| | || | ||| |||||||||| | Sbjct 14723080 GTTTGCTTAAAGTCAGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT---TC 14723136 Query 171566 CCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTA 171625 ||||| ||| | ||||| ||||| || || || ||||| |||||||| |||||||| || Sbjct 14723137 CCCACCTGATTCTTAGGGTCTTTGACATGGAGGATGCTGGTAACAGACGTAGTCCCATTT 14723196 Query 171626 CGATGTAGAACG-GTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATAT 171684 | || ||| | || ||||||||||| | || || | | || ||||| || || Sbjct 14723197 GGGTG-AGACAGAGTCACTGTACTATTTTCAAACCCTGACCGAGGGACCTTCCAGAAGAT 14723255 Query 171685 AACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 | || ||||| | ||||| ||||||||||| ||||||| Sbjct 14723256 CATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATGTTTA 14723296 >seq1514 Length=3475191 Score = 145 bits (160), Expect = 9e-30 Identities = 437/663 (66%), Gaps = 15/663 (2%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| |||| | || || | | | Sbjct 1177416 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTTG 1177357 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | ||||| Sbjct 1177356 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATGTAAT 1177297 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || ||||| |||| ||| || || | ||||| | || |||| || || Sbjct 1177296 TCTCATAGTTTTCTCTAGATGGTCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 1177237 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || ||| |||| | || || ||||| | ||||| |||| Sbjct 1177236 TGTAGAGCTTTTCTGTGATGTAATCCTTGTGGATTGAATTTTCAAAGGAAAGATAAAATT 1177177 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 1177176 TACAAGTAGATATGGTA--GGAATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 1177119 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || || | | Sbjct 1177118 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 1177060 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| || ||||| |||||||| || || Sbjct 1177059 GCTCAGGGTTCCAGTTACTCACAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC---- 1177005 Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | || || | | | || | ||| | | ||||| ||||| || ||||| || Sbjct 1177004 TTCAAACACAAAGGGATTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGA 1176945 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC-TTGTTTGAAGGGGC 177420 |||||| | || || | || || || || | || || || || | ||| ||| | Sbjct 1176944 GTCGCGGCGATAAGTCAGAGTCAGGTTAAACAAGTGCTCAATGCCACTCTTTTGAGGAG- 1176886 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480 ||| | | || || || || |||||||| ||||| || || |||| ||| || | || | Sbjct 1176885 TGTGAGTTGGTGACTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCTTGCT 1176826 Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTT 177540 ||||| | | |||| ||| || |||| ||| || | | || |||| || || Sbjct 1176825 GAGGTAAATTTGTCAGATCCCAACTGATGTCTCGGTGATGGATCAGAACTGCATGGGATT 1176766 Query 177541 TGT 177543 ||| Sbjct 1176765 TGT 1176763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578361626516800