Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq7002 131 1e-25 seq7446 109 4e-19 seq5557 89.7 3e-13 seq547 89.7 3e-13 seq3 89.7 3e-13 seq1299 87.8 1e-12 >seq7002 Length=12659153 Score = 131 bits (144), Expect = 1e-25 Identities = 166/227 (73%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || ||||||| || || ||| |||||| || |||||||| || ||| Sbjct 9467041 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 9467100 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| ||||||||| || | || Sbjct 9467101 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 9467160 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | ||| || ||||| |||||| ||| | ||| ||| |||||| || | || || Sbjct 9467161 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CATTCTCATGGTGTCACTGGGCTCGACC 9467219 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | | ||||| ||||| || || | || || |||||||||||||| Sbjct 9467220 TTGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 9467266 >seq7446 Length=17224310 Score = 109 bits (120), Expect = 4e-19 Identities = 163/228 (71%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || ||||||| || || ||| ||||| | |||||||| || ||| Sbjct 13346887 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTT---GGATGTTGTAGTCTGAG 13346943 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| | |||||| |||| ||||||||| || | || Sbjct 13346944 AGAGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGG 13347003 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| ||| | | | ||| |||||| || | || || Sbjct 13347004 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CGTTCTCAATGGTGTCACTGGGCTCGAC 13347062 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| || | | || || |||||||||||||| Sbjct 13347063 CTCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCAT 13347110 >seq5557 Length=63123227 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || |||||| | || ||||| ||||| | || |||| ||||| || ||||| Sbjct 51838201 CTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAA 51838260 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| ||||||||| || | || | || || ||| | |||||| || | ||| Sbjct 51838261 TATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTTGGCTTGAATTTTGGCCTTGA-CAT 51838319 Query 33678 AGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| |||||| || | || || || | ||||| || || ||||| | || || | Sbjct 51838320 TCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTCA 51838379 Query 33737 CAAAGATCTGCAT 33749 ||||||||||||| Sbjct 51838380 CAAAGATCTGCAT 51838392 >seq547 Length=9034655 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || | ||||| || || ||| ||||| |||| ||| || ||| Sbjct 8022874 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTCCCAGATGTCGTAGTCTGAG 8022815 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| ||||| ||||||| |||| | ||||||| || | || Sbjct 8022814 AGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGGG 8022755 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| ||| | ||| ||| |||||| || | | || Sbjct 8022754 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CATCCTCATTGGTGTCACTGGGCTTGAC 8022696 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 8022695 CTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTCACAAAGATCTGCAT 8022648 >seq3 Length=16319837 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || | ||||| || || ||| |||||| || ||||| || || ||| Sbjct 14926625 CCACCTCACAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTCTAGTCTGAG 14926566 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||| | || ||| ||||| || ||||| |||| || |||||| || || | Sbjct 14926565 AGACTGCGGCCATCCTCCGGCTGTTTGCCCGCAAATATCAGACACTGCTGGTCAGGCAGG 14926506 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || | ||||| |||| | | || |||| ||| |||||| || | ||||| Sbjct 14926505 ATGCCCTACTTGTCTTGGATTT-CGGCTTTGACATTCTCAGTGGTGTCCCTGGGCTCCAC 14926447 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || | | || || |||||||||||||| Sbjct 14926446 CTCAAGGGTGATGGTCTTGCCCATGAGGGTGTTCACAAAGATCTGCAT 14926399 Score = 84.2 bits (92), Expect = 1e-11 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 33539 ACACCAAATGT--AGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTC 33596 |||||| | || || ||| |||||| || |||||||| || || || ||||| | || Sbjct 4626404 ACACCATAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 4626345 Query 33597 GTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 |||| || ||||||||||| |||| | |||||| || | || | ||||| || || Sbjct 4626344 TTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATC 4626285 Query 33657 GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCG 33715 || || || | |||| || | |||||| || | || || |||| ||||| | Sbjct 4626284 TTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGG 4626226 Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | || || || | || || || ||||||||||| || Sbjct 4626225 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTGT 4626189 >seq1299 Length=15376 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| | ||| ||| |||||| || |||||||| | ||||| ||||| | || || Sbjct 1935 CACCAGGTTTAGGGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCATCCTC 1876 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACA-CCTTCTTTGTCGG 33658 || ||||| || |||| |||| ||||||||| || | || | | || || ||||| Sbjct 1875 CAGCTGTTTCCCAGCAAGTATCAGACGCTGCTGGTCAGGTGGGATATCCCTCCTTGTCTT 1816 Query 33659 CAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTT 33717 |||||| ||| | ||| | | |||||| || | || | |||| ||||| || Sbjct 1815 GAATTTTGGCTTTGA-CATTCTAAATGGTGTCACTGGGCTCAATCTCAAGGGTGATGGTC 1757 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || | || || |||||||||||||| Sbjct 1756 TTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 1725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328665008823360