Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1670 129 1e-24 seq9446 118 3e-21 seq8446 104 6e-17 seq359 102 2e-16 seq4780 100 7e-16 seq3 96.9 8e-15 seq6668 95.1 3e-14 >seq1670 Length=4706099 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| | || || ||| || || || | ||| Sbjct 2974039 AAAACCCTCACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGATACGATAGAAAAT 2974098 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || |||||||| ||||| Sbjct 2974099 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTT 2974158 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || ||||| | || || |||||| Sbjct 2974159 GCTGGCAAGCACCTGGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAAGGAGTCT 2974218 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 2974219 ACTCTTCATCTTGTGTTGAGACTTCG 2974244 Score = 109 bits (120), Expect = 1e-18 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || | ||| ||||||| |||||| Sbjct 2974244 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTA 2974185 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||| ||||| || || ||||| || | ||| ||| Sbjct 2974184 CGTCCATCTTCCAGGTGCTTGCCAGCAAAGATCAGTCTTTGCTGA 2974140 >seq9446 Length=14842378 Score = 118 bits (130), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | || || ||| || | || | ||| Sbjct 8609820 AAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCGAATACGATAGAAAAT 8609879 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT-CAAAGACTTATCTT 206303 |||||| ||||| || || || ||||||||| || | | || |||||||| ||||| Sbjct 8609880 GTAAAGGCCAAGATCCAGGAGAAGGAAGGAATTCCTCCTG-CTCTGCAAAGACTGATCTT 8609938 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||| ||||||||||| | |||||| | || ||||| | || || ||||| Sbjct 8609939 TGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAAGGAGTC 8609998 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| ||||| ||||||||||| Sbjct 8609999 TACTCTTCATCTTGTGTTGAGACTTCG 8610025 Score = 105 bits (116), Expect = 2e-17 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || | ||| ||||||| |||||| Sbjct 8610025 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTA 8609966 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTG 204852 | |||||||||||| ||||| || || ||||| || | ||| Sbjct 8609965 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTG 8609925 >seq8446 Length=17995230 Score = 104 bits (114), Expect = 6e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || | ||| ||||||| ||||||| Sbjct 4537448 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTC 4537507 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | | |||||||||| ||||| || || ||||| || ||| ||| Sbjct 4537508 CATGCATCTTCCAGTTGCTTGCCAGCAAAGATCCCCCTTTGCTGA 4537552 Score = 93.3 bits (102), Expect = 1e-13 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 206255 AGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGC 206314 |||| || || || ||||||||| || | ||||| ||||| || || |||| Sbjct 4537583 AGATCCAGGATAAGGAAGGAATTCCTCCTGCTCAGCAAAGGGGGATCTTTGCTGGCAAGC 4537524 Query 206315 AGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACC 206374 | ||||||||| | |||||||| | || ||||| | || || |||||||||||||| | Sbjct 4537523 AACTGGAAGATGCATGGACTTTGTCTGACTACAATATTCAAAAGGAGTCTACTCTTCATC 4537464 Query 206375 TTGTTTTGAGACTTCG 206390 |||| ||||||||||| Sbjct 4537463 TTGTGTTGAGACTTCG 4537448 >seq359 Length=9844545 Score = 102 bits (112), Expect = 2e-16 Identities = 149/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| || || ||||| | || || ||| || || || | | || Sbjct 8207920 AAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCCTCAGATAC-GACAAAAAT 8207862 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || | |||||||| ||||| Sbjct 8207861 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATGGGCAAAGACTGATCTTT 8207802 Query 206305 GCCGG--AAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 || | |||||| |||| |||||| | |||||| | || |||| | | || || |||| Sbjct 8207801 GCTAGCAAAAGCAACTGGAGGATGGATGTACTTTGTCTGACTACA-CATTCAAAAGGAGT 8207743 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||||| |||| |||| ||||| Sbjct 8207742 CTACTCTTCATCTTGCGTTGACACTTC 8207716 >seq4780 Length=17887985 Score = 100 bits (110), Expect = 7e-16 Identities = 147/205 (72%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 206187 AACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT 206246 ||| || ||||| || || ||||| | || | ||| || |||||| | ||| || Sbjct 5699121 AACCCTTACAGGGAAGACCATCACCCTCGAGGGTGAACCCTCGGACACAATAGAAAATGT 5699062 Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC-GGACGCTCAAAGACTTATCTTCG 206305 | || ||||| || | || ||||||||| || || || || |||| ||||| | Sbjct 5699061 ATAGGCCAAGATCCAGGTTAAGGAAGGAATTCCTCCTGGTCGG-CAGAGACCGATCTTTG 5699003 Query 206306 CCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTA 206365 | || ||||| ||||||||||| | ||||| || ||||| | || |||||||||| Sbjct 5699002 CTGGCAAGCAACTGGAAGATGGACGTACTTT----GACTACAATATTCAAAAAGAGTCTA 5698947 Query 206366 CTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||| |||| ||||||||||| Sbjct 5698946 CTCTTCATTTTGTATTGAGACTTCG 5698922 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 4/92 (4%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| |||| ||||||||||||||||| || | ||| |||| |||||| Sbjct 5698922 CGAAGTCTCAATACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGT----CAAAGTA 5698977 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 | |||||||||||| ||||| || || ||||| Sbjct 5698978 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGAT 5699009 >seq3 Length=16319837 Score = 96.9 bits (106), Expect = 8e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| || ||||| ||| || ||| || || || ||||| Sbjct 4626267 GTCAAGGCAAAGATCCAAGATAAGGAAGGCATTCCTCCCGACCAGCAGAGGCTGATCTTT 4626326 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||||||||| | || || | || |||||| ||||||||||||| Sbjct 4626327 GCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCC 4626386 Query 206365 ACTCTTCACCT 206375 || || ||||| Sbjct 4626387 ACCCTGCACCT 4626397 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 204767 AGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGC 204826 ||||| || || ||||||||||||| || ||||||| || || | |||||||||||| Sbjct 4626397 AGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGC 4626338 Query 204827 TGCTTTCCGGCGAAGATAAGCC 204848 ||||||||||| ||||| |||| Sbjct 4626337 TGCTTTCCGGCAAAGATCAGCC 4626316 >seq6668 Length=25972781 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 7066540 GTAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 7066599 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || | |||| ||||||||||| | |||||| | ||||||||| || ||||||| Sbjct 7066600 GCTGTCGAGCAACTGGAAGATGGACGTACTTTGTCTGATTACAACACTCAAGAAGAGTCC 7066659 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||| | ||| |||||| ||| Sbjct 7066660 ACTCTTCATCATGTGTTGAGATTTC 7066684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181673422145093