Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq781 107 6e-20 seq2125 98.7 3e-17 seq137 98.7 3e-17 seq3 98.7 3e-17 seq1 98.7 3e-17 seq6469 93.3 1e-15 seq1281 84.2 7e-13 >seq781 Length=2996164 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1082136 GCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1082195 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1082196 CCGGGTTTCGGC 1082207 Score = 105 bits (116), Expect = 2e-19 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1099815 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 1099874 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 1099875 CCCGGGTTTCGGC 1099887 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1130443 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1130502 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1130503 CCGGGTTTCGGC 1130514 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 907577 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 907636 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 907637 CCGGGTTTCGGC 907648 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1144447 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1144388 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1144387 CCGGGTTTCGGC 1144376 >seq2125 Length=1792188 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 331240 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 331181 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 331180 CCGGGTTTCGGC 331169 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 341866 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 341807 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 341806 CCGGGTTTCGGC 341795 >seq137 Length=13323094 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 6321407 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 6321348 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 6321347 CCGGGTTTCGGC 6321336 >seq3 Length=16319837 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 4608881 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 4608940 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 4608941 CCGGGTTTCGGC 4608952 >seq1 Length=22034461 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 20709140 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 20709199 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 20709200 CCGGGTTTCGGC 20709211 >seq6469 Length=21074 Score = 93.3 bits (102), Expect = 1e-15 Identities = 67/75 (89%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGA--AGATCT-AAAGGTCCCTGGTTCA 2825 |||||| ||||||| |||||||||| ||||||||| ||| || |||||||||||||||| Sbjct 5983 GCTGAAATAGCTCAATTGGGAGAGCGTTAGACTGACCAGACCTTAAAGGTCCCTGGTTCA 5924 Query 2826 ACCCCGGGCTTCAGC 2840 |||||||| |||||| Sbjct 5923 ACCCCGGGTTTCAGC 5909 >seq1281 Length=3716335 Score = 84.2 bits (92), Expect = 7e-13 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||||||||| ||||||||||||||||||||||||||||| | || || Sbjct 2853973 AAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTTGATCCTGG 2853914 Query 2833 GCTT 2836 | || Sbjct 2853913 GTTT 2853910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847912735785