Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq3558 275 7e-69 seq225 159 4e-34 seq59 145 9e-30 seq7779 109 6e-19 >seq3558 Length=16468325 Score = 275 bits (304), Expect = 7e-69 Identities = 251/317 (79%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128 || ||||||||||||||||| || | || |||| |||| || || ||| | | |||||| Sbjct 14725945 CAAGTGGTGACCCAGGATGAAAGAGAGCAGCTGTACACTCCTGCTTCCTTAAGATGCTCT 14725886 Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188 ||||| | | | ||||| || |||||||| || |||||||||| || | | ||| Sbjct 14725885 CTGCAAAATGCCCAGGAAGTCCTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCA 14725826 Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248 || |||||| | || || ||| | |||| ||||||||| ||||||| || ||||||||| Sbjct 14725825 GAAAACATGGTCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAGGAC 14725766 Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308 ||||||||||| |||||||| |||||||||||| |||||||||| || ||||||| |||| Sbjct 14725765 AAGATAAACATTACCCAGCTGGGACTCCAAAACACAACCATCACCTTCTGGAATATCACC 14725706 Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368 | ||||| || ||||| |||| || ||||| || |||||||| |||||||| ||||| Sbjct 14725705 CTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTCTGGGAAGATCTCA 14725646 Query 171369 GGGGTGGCCTGCCTCAC 171385 || ||||||||||| Sbjct 14725645 GGAACAGCCTGCCTCAC 14725629 >seq225 Length=41818005 Score = 159 bits (176), Expect = 4e-34 Identities = 134/167 (80%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 37295725 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 37295666 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| || || ||||| ||| | ||| ||||| ||||||||||| |||| Sbjct 37295665 TGCCCCAAGCTGAGAACCAC------------GACCCAGACATCAAGGAGCATGTGAACT 37295618 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| || || |||||||| || ||||||||||||| ||| Sbjct 37295617 CCCTGGGGGAGAATCTGAAGACCCTCAGGCTGAGGCTGCGGCGCTGT 37295571 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| |||||||||||||| || || || ||||||| Sbjct 37293328 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 37293269 Query 178522 TAGAAGCTTACATGACAA 178539 ||||||| |||||||||| Sbjct 37293268 TAGAAGCCTACATGACAA 37293251 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 ||||||||||| |||||||||||||| |||||||| | |||| ||||||| ||||||||| Sbjct 37296077 CAAATGAAGGATCAGCTGGACAACATATTGTTAAAGGAGTCCTTGCTGGAGGACTTTAAG 37296018 Query 178233 G 178233 | Sbjct 37296017 G 37296017 >seq59 Length=9163144 Score = 145 bits (160), Expect = 9e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | |||||| |||||||| | ||||||||| |||||||| Sbjct 409647 CTTCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAA 409706 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || || ||||||||||| ||||| ||||||||||||||||| || ||||| | || Sbjct 409707 AGGCACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTT 409766 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || |||||||| || ||||| || ||||| ||||| Sbjct 409767 CACCACATAGAACTGGCAGAGAGCATGGCATGGAGGCAGTGCCAT 409811 Score = 86.0 bits (94), Expect = 7e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| |||| ||| || | |||| Sbjct 414127 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCTCTGGCG 414186 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | | ||| || |||| || | ||| |||||||| ||||||| Sbjct 414187 GAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCC 414246 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 |||| || ||||| |||| | || || ||| ||| || Sbjct 414247 TTGGAAGACAGCTCTTTAGCATTTGTAGATCCCTGGAAGA 414286 >seq7779 Length=26856881 Score = 109 bits (120), Expect = 6e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| || | || || | ||||| | ||||| | | ||||||| Sbjct 16645394 GTATTCCCTGGTGTTCATGGTGGGCCTCTTGGGCAACGTGGTGGTGGTGATGATCCTCAT 16645453 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||| ||||||| | || ||||||||||||| |||| ||||||||||| || || Sbjct 16645454 AAAATACAGGAGGCTCCGAATTATGACCAACATCTACCTGCTCAACCTGGCCATTTCGGA 16645513 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | |||||||| || || ||||| |||| Sbjct 16645514 CCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT 16645551 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||| ||| | |||| | |||| || ||||||| |||| ||||| | Sbjct 16577324 GTACTCCTTGGTATTTGTCATTGGCGTGGTTGGAAACCTCCTGGTGGTCCTGGTCCTTGT 16577265 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | |||||||||||||| ||| | ||||||||| || ||| Sbjct 16577264 GCAATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACCTGGCCATTTCTGA 16577205 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTT 8756 |||||| | | ||||| || ||||| Sbjct 16577204 CCTGCTCTTCCTGTTCACACTGCCCTT 16577178 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | ||||| | | ||||| ||||| |||| |||| ||| Sbjct 16768601 TACTCACTGGTGTTCATCTTTGGTTTTGTGGGCAACATACTGGTCGTCCTCATCCTGATA 16768660 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||| ||||| | | |||||| |||||| |||| ||||||||||| | |||| Sbjct 16768661 AACTGCAAAAGGCTGAAAAGCATGACTGACATCTACCTGCTCAACCTGGCCATCTCTGAC 16768720 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||||| | || | || ||||||| ||| ||||| Sbjct 16768721 CTGCTTTTCCTTCTTACTGTCCCCTTCTGGGCTCACT 16768757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583417011391200