Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1670 114 1e-20 seq3 114 1e-20 seq9446 107 2e-18 seq758 102 7e-17 seq6668 100 3e-16 seq7002 95.1 1e-14 seq7446 84.2 2e-11 >seq1670 Length=4706099 Score = 114 bits (126), Expect = 1e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| |||||||||||| ||||| || | | Sbjct 2974250 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 2974191 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | ||||| || | |||| Sbjct 2974190 AAAGTACGTCCATCTTCCAGGTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 2974131 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | ||| || | ||| ||| Sbjct 2974130 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 2974071 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA 35735 || | ||||| || || ||||| | |||||||| || ||||||| Sbjct 2974070 TCGAGGGTGATGGTCTTCCCCGTGAGGGTTTTCACGAAAATCTGCA 2974025 >seq3 Length=16319837 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 4626383 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAA 4626324 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||||| || ||||| || ||||||| ||| | | | Sbjct 4626323 GATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTTGCCTTGACATT 4626264 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| || ||||| Sbjct 4626263 CTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 4626204 Query 35725 AAATATCTGCATT 35737 || ||||||||| Sbjct 4626203 GAAGATCTGCATT 4626191 >seq9446 Length=14842378 Score = 107 bits (118), Expect = 2e-18 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| |||||||||||| ||||| || | | Sbjct 8610031 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 8609972 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | ||| | | | |||| Sbjct 8609971 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAGGA 8609912 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA---TTCC 35686 | | ||||| ||| |||||| ||| | | || | | ||| | |||| ||| Sbjct 8609911 ATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTAT---TCGAGGGTTCA 8609855 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 ||||| | ||||| || || ||||| | |||||||| || ||||||||| || Sbjct 8609854 ACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 8609801 >seq758 Length=2790677 Score = 102 bits (112), Expect = 7e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 2565179 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 2565120 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || ||||| ||| ||| || ||||| | | Sbjct 2565119 GATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATT 2565060 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||| | ||||| || || || |||| || ||||| Sbjct 2565059 TTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 2565000 Query 35725 AAATATCTGCATTCTG 35740 || ||||||||| || Sbjct 2564999 GAAGATCTGCATTTTG 2564984 Score = 100 bits (110), Expect = 3e-16 Identities = 138/192 (72%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 2565635 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 2565576 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || || || ||| |||||| ||||| | | Sbjct 2565575 GATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATT 2565516 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||| ||||| ||||| || || || |||| |||||||| Sbjct 2565515 TTCGATGGTGTCACTGGGCTCCA-CTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCAC 2565457 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 2565456 GAAGATCTGCAT 2565445 >seq6668 Length=25972781 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 35511 CACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCA 35570 |||||| | ||||||| | ||| | ||| |||||||||||||||| | || | || Sbjct 3822673 CACCACAAAGTCTCAACAAAAGATGAAGGGTAGGCTCCTTTTGAATGTTGCAGTCAGACA 3822614 Query 35571 AGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAA 35630 | || || |||| ||||| |||| || ||||| |||| | ||||| || | ||||| Sbjct 3822613 AAGTACGTCCGTCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAA 3822554 Query 35631 CGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCT 35690 | ||||| ||| |||||| ||| | | || | |||| || | ||| | || Sbjct 3822553 TTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAATCT 3822494 Query 35691 CCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 | | ||||| || || ||| | | |||||||| || ||||||||| || Sbjct 3822493 CAAGGGTGATAGTCTTCCCCCTTAGGGTTTTCACGAAAATCTGCATTTTG 3822444 >seq7002 Length=12659153 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | |||||||| || | || ||| || || |||||||| || | Sbjct 9467041 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 9467100 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||||||| || || |||||||||| ||||||||||| | || Sbjct 9467101 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 9467160 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| | ||| ||| |||| || || ||||| || | || ||| Sbjct 9467161 ATACCCTCCTTGT-CTTGAATTTTGGCTTTGACATTCTCATGGTGTCACTGGGCTCGACC 9467219 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | | ||||| ||||| ||||| | || |||||||| |||||||| Sbjct 9467220 TTGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 9467266 >seq7446 Length=17224310 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 35548 CTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATAT 35607 || ||| |||||||| || | | || || | || |||||||| || | |||||||| Sbjct 13346922 CTCTTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAATAT 13346981 Query 35608 CAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT-G 35666 || ||||||||||| | || | | |||||||| | ||| ||| |||| ||| Sbjct 13346982 CAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGT-CTTGAATTTTGGCTTTGACGTTCT 13347040 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | ||||| || | || ||||| | ||||| ||||| |||| | || ||||||| Sbjct 13347041 CAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAA 13347100 Query 35727 ATATCTGCAT 35736 | |||||||| Sbjct 13347101 AGATCTGCAT 13347110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450738755323640