Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq37 284 2e-71 seq237 226 4e-54 seq337 125 1e-23 seq9297 120 4e-22 seq9224 114 2e-20 seq3224 114 2e-20 seq170 93.3 6e-14 seq1336 89.7 7e-13 >seq37 Length=10148950 Score = 284 bits (314), Expect = 2e-71 Identities = 626/934 (67%), Gaps = 17/934 (2%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTT 39326 |||| |||||| |||| || | |||| ||| ||| | | |||| |||||||| Sbjct 6162987 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGATTCGACACCACTCCCATCC 6163046 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || || || | ||||| || || || || ||| || ||| ||||| | Sbjct 6163047 TCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAATATTCT 6163101 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| || ||||| || || | | | | || |||| || | ||| | || Sbjct 6163102 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGCATG- 6163160 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 ||| ||||| ||||| || |||||| ||||| | |||||||| || ||||| | Sbjct 6163161 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 6163219 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 | || || | ||||| || || || || | ||| || || || | | ||| | Sbjct 6163220 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTT 6163279 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 | ||| | ||| || ||| || | | || || ||||| | ||| || || | Sbjct 6163280 CTCTTATTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAAT 6163339 Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686 |||| |||| |||||||||| |||||| | ||| || ||||| ||||| |||||||| | Sbjct 6163340 CACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCA 6163399 Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746 | || || || |||||||| ||||| | |||||| | |||||||||| ||||||| Sbjct 6163400 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCCG 6163456 Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACTTCT 39803 |||| ||||| | |||| | || || || | | | || | ||||| | | Sbjct 6163457 CTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTGCA 6163516 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 |||||||| || |||||||| ||||||||||| ||||| || ||||| ||| || | | Sbjct 6163517 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 6163576 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 |||| | |||||| | || || || || | | |||||||||| | ||||| | Sbjct 6163577 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTA 6163636 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 ||||||| || || || || || || | ||||| | ||||| || | || || ||| Sbjct 6163637 TGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTT 6163696 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 | | ||| ||| |||| ||| |||| ||||| |||||||| || ||||| || ||| Sbjct 6163697 GGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAAACCA 6163755 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103 ||||| ||||||||| | || ||||| ||| | ||||| || || | Sbjct 6163756 GAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGAATTCCCAGTGCCAAATGTCCT 6163815 Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCC 40163 | || || || || || || ||||| || || || || ||||| || ||||| | || Sbjct 6163816 TGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGCC 6163875 Query 40164 ATATATCACGATATTGTATTGGAAAAATAACAAA 40197 | |||||| | || | || || || || ||||| Sbjct 6163876 AGATATCATGGTACTCGATGGGGAAGATGACAAA 6163909 >seq237 Length=7777549 Score = 226 bits (250), Expect = 4e-54 Identities = 396/566 (70%), Gaps = 14/566 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || |||| ||| |||| |||||||| || ||||| | ||| || ||||||||||| Sbjct 5488339 GCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAG 5488398 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| || || | || |||||||| ||||| |||||||| ||||||||||| Sbjct 5488399 GCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAA 5488458 Query 39736 GATGCCTTCTACTGCTGCAAA---TGCAACAAG-TCTCTCTCCGTAACTTGTATCATTAT 39791 | ||| ||| ||| ||||| ||||||| | |||| | ||||| | | | || Sbjct 5488459 GGTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCT-TTGTTCC 5488517 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| | ||||| | || |||||||| |||| |||||||||| | || |||| Sbjct 5488518 CAATCCAACACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTCCAATGGCAT 5488576 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 | |||||| | | |||| | |||||||| || ||| || || | ||||||| | Sbjct 5488577 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTA 5488634 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 | || ||||| |||||||| | || || || || || || || || | ||| |||| Sbjct 5488635 TGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAA 5488694 Query 39972 TTTGTACCTC-TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCG 40030 | || | || ||||| |||| |||| |||| ||||||| ||||| ||||||| || Sbjct 5488695 TCTGAATTTCTTGAAC-AAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCT 5488753 Query 40031 GCAAAAAATGCC--AATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 ||||| || ||| |||| | | | ||||||||| |||| || || ||| | || Sbjct 5488754 GCAAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCC 5488811 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 ||| || || || || | | || || | || |||| || || ||||| | | Sbjct 5488812 AGTGCCAAATGTCCTTGGACAGGTTCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTT 5488871 Query 40149 TTTTGTACATGTTCCATATATCACGA 40174 | || ||| | ||||| |||||| || Sbjct 5488872 TCTTATACGTTTTCCAAATATCATGA 5488897 >seq337 Length=12475526 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || ||||||||||| |||||||| || || || || | Sbjct 7490257 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 7490316 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| || ||||||||||||||||| ||||| ||||| | Sbjct 7490317 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 7490376 Query 39759 CAAC 39762 | || Sbjct 7490377 CTAC 7490380 >seq9297 Length=17183 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||| ||||| ||||| | ||| || Sbjct 1697 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1638 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 1637 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1578 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 1577 ACCACTCTTTCCCC 1564 >seq9224 Length=17174830 Score = 114 bits (126), Expect = 2e-20 Identities = 245/362 (68%), Gaps = 7/362 (2%) Strand=Plus/Plus Query 37338 TTATTTCAGTCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTG 37397 ||| ||| ||| || || ||||| || | || || || || |||| | || ||| Sbjct 3229281 TTAATTCTTTCCAGTGGAACCAAAACCGCCTGAACCCCTTTCGGTGTCATCCAAAGCTTG 3229340 Query 37398 TACTTCATTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCC 37457 ||||| | | || |||||| | || |||| | || || || || |||| ||| || Sbjct 3229341 AACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGTTGTGCAATTCGATCACC 3229400 Query 37458 CGTATTTATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCT 37517 | | || | || ||| || ||| ||| ||| | ||| | || |||| ||| || || Sbjct 3229401 CTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCT 3229460 Query 37518 ATAATCTTCATCGATTACTCCGCCTCCTACATCAATA---CCTTTTAGAGACAAACCCGA 37574 ||||||||||| || || || |||||||||||||| |||| || ||| || || Sbjct 3229461 ATAATCTTCATTTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGA 3229520 Query 37575 TCTAGGAGCTATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAAT 37634 | ||||||| |||||||||||| || | | ||| |||| || ||||| | Sbjct 3229521 CCGTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGCTATCTGAATGTCCGTTTTCA- 3229579 Query 37635 CAATTGTCTTTCTCC--AGGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCC 37692 ||| | |||||||| ||| | || |||||||| || || || || | || || ||| Sbjct 3229580 CAAGAG-CTTTCTCCATAGGTGGTATTGTATAATCATAGGCACTGTACAGGTCGTAGCCC 3229638 Query 37693 GC 37694 || Sbjct 3229639 GC 3229640 >seq3224 Length=21299586 Score = 114 bits (126), Expect = 2e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| |||||||| || || | || || |||||||| || | Sbjct 2338130 CACTGAACACTTTCTTTGTTTCTTTGTGTAAGTTAGAGACAGCAATCCTGGCTGCCAGGA 2338189 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||||||||||| || | ||||| | || || ||| |||| ||||| || ||||||| Sbjct 2338190 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 2338249 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || | || | ||||| || |||||||||| Sbjct 2338250 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 2338297 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| |||||||||||||| | || |||||||||| | | Sbjct 2317668 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 2317727 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 || || |||||||| || || || | ||| || || || | || || ||||||| || Sbjct 2317728 TCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 2317787 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 2317788 TCCAGGTAAATAGC 2317801 >seq170 Length=10713981 Score = 93.3 bits (102), Expect = 6e-14 Identities = 239/359 (67%), Gaps = 10/359 (3%) Strand=Plus/Minus Query 37347 TCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATT 37406 ||| || || ||||| ||| | || || || || |||| | || ||| ||||| | Sbjct 2521879 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCCGTGTCATCCAAAGCTTGAACTTCTTC 2521820 Query 37407 CAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTAT 37466 | || |||||| | || |||| | || ||||| || |||| ||| | | | || | Sbjct 2521819 TATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACACTTTTTGAC 2521760 Query 37467 TTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTC 37526 || ||| || ||| ||| || | ||| | | |||| ||| || ||||||||||| Sbjct 2521759 TTCAAACTTTTCTTTGCCAAAGTTAAACAGTACACCACCAACATTTCCTCTATAATCTTC 2521700 Query 37527 ATCGATTACTCCGCCTCCTACATCAATA----CCTTTTAGAGACAAACCCGATCTAGGAG 37582 ||| || || || |||||||||||||| ||| || ||| || || |||| Sbjct 2521699 ATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAAGCCAAGCCTGACTGTGGAG 2521640 Query 37583 CTATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATTGTC 37642 ||| |||||||||||| || | | ||| |||| || ||||| | ||| | | Sbjct 2521639 CTACTCTTCCATAACACCCAGAAGGGAGCGCTATCTGAATGTCCGTTTTCA-CAAGAG-C 2521582 Query 37643 TTTCT--CCAGGAAGGATGGTATAATCGTACGCGCTATATAAAT--CATATCCCGCGGC 37697 ||||| ||||| | || || ||||| || || || || | | | || |||||||| Sbjct 2521581 TTTCTCCCCAGGTGGTATTGTGTAATCATAGGCACTGTACAGGTCCCGTAGCCCGCGGC 2521523 >seq1336 Length=15368434 Score = 89.7 bits (98), Expect = 7e-13 Identities = 182/265 (69%), Gaps = 9/265 (3%) Strand=Plus/Plus Query 37338 TTATTTCAGTCCTGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACCATCTAGAGAT 37395 ||| ||| ||| || || ||||| ||| ||| | ||| | ||| |||| | || | Sbjct 3172625 TTAATTCTTTCCAGTAGAACCAAAACCTCCTGAACCCCTTTTGGTGT--CATCCAAAGCT 3172682 Query 37396 TGTACTTCATTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCG 37455 || ||||| | | || ||||| | || |||| | | || ||||| || |||| ||| Sbjct 3172683 TGAACTTCTTCTATTTCTGGATAGAACATCCGTTCACAAATGAGCTGTGCAATTCGATCA 3172742 Query 37456 CCCGTATTT-ATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCC 37514 | ||||| | || ||| || ||| ||| ||| | | | || |||||||| || Sbjct 3172743 CGT-TATTTGACTTCAAACTTTTCTTTGCCAAAATTAAAGACTACAACACCAATATTTCC 3172801 Query 37515 CCTATAATCTTCATCGATTACTCCGCCTCCTACATCAATACC---TTTTAGAGACAAACC 37571 |||||||||||||| | || || |||||||||| | | | |||| || ||| || Sbjct 3172802 TCTATAATCTTCATCTGTGACACCAGCTCCTACATCTACAACGTGTTTTGCAGCCAAGCC 3172861 Query 37572 CGATCTAGGAGCTATTCTTCCATAA 37596 || | ||||||| |||||||||| Sbjct 3172862 AGACCGTGGAGCTACTCTTCCATAA 3172886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686825228958120