Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq37 233 2e-56 seq337 113 4e-20 seq1303 98.7 8e-16 seq59 98.7 8e-16 seq5558 86.0 5e-12 >seq37 Length=10148950 Score = 233 bits (258), Expect = 2e-56 Identities = 617/924 (67%), Gaps = 45/924 (5%) Strand=Plus/Minus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | |||||| || | | |||||| | || || || | || ||||| || |||| Sbjct 6163932 TGCTGAGAGAAAACCCCTGCCGTTTTGTCATCTTCCCCATCGAGTACCATGATATCTGGC 6163873 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 | ||||| || || || | || || || ||||| || || || || || | | || | Sbjct 6163872 AGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACCCGTCCAAGG 6163813 Query 43797 AC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854 || || |||| | ||| | | || || | || | | |||||||||| ||| | Sbjct 6163812 ACATTTGGCACTGGGAATTCC--TGAAGCCCGAGGAGAGATATTTTATATCCCATGTTCT 6163755 Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914 || || ||||| || || || || ||||| |||| ||| ||||| || | | || Sbjct 6163754 GGTTTTCTTTGC-GCAAGTGATGGCATAGTAAATGCAAACTTGGTGGAGCGATGTAGCCA 6163696 Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 ||||||||| | ||||||| || ||||| | ||| || ||||||||||| ||||| || Sbjct 6163695 AGAAGTTCAGGTGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCATGGAAAACAT 6163636 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 ||||| | |||||| ||| | || || || || ||||| |||||| | || | | | Sbjct 6163635 ACATTCTGGAATGTATAGTTTCCTTATTGACACTTACATAAAAGATCCCAAAGAAAGGGA 6163576 Query 44035 ---TCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGC 44091 ||| || ||||| || ||||| | ||| | || | || ||||| ||||| Sbjct 6163575 ATTTCG---CTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGC 6163519 Query 44092 CCTTAAATGGA-TAAATTCAAA--TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGT 44148 | | | |||| | |||| | | | | ||| ||||| |||| | ||||| | Sbjct 6163518 CTTGCACTGGATTGGGGACAAAGCAGCTACCTATGGGGAACGTGTTGTAGTCTTTGCTGC 6163459 Query 44149 TGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208 | |||||||| ||||||| || | ||||| | ||||| ||| | ||||||||||| Sbjct 6163458 AGCGGAAGGCA---TCTTTTCTGGTTATTTTGCATCGATATTCTGGCTCAAGAAACGAGG 6163402 Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTG 44268 |||||||||| | || ||||| ||||| | || ||| | ||||| || ||||| || Sbjct 6163401 ACTGATGCCTGGCCTCACCTTTTCCAATGAACTTATTAGTGGAGATGAGGGTTTACACTG 6163342 Query 44269 CGATTTTGCTTGCTTGTTACTTGGAT-ATCTAGGAGACGATAAGCCTTCATGTA--AGAC 44325 |||||||||||| || | || || | || | | || || || | || | ||| Sbjct 6163341 TGATTTTGCTTGCCTGAT-GTTCAATCACCTGGTACAC---AAACCAT--TGGAGGAGAG 6163288 Query 44326 AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATT 44385 ||| | ||| | || | | || || ||||||||| ||||| | || || || Sbjct 6163287 AATAAGAGAAAGAATTATCAATGCTGTTCGGATAGAACAGGAATTCCTCACTGAGGCCTT 6163228 Query 44386 ACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTG 44444 ||||| || | || || ||||| || || | | ||||| ||||| ||||| | | | Sbjct 6163227 GCCTGTGAAGCTCATTGGGATGAATTGCAC-TCTAATGAAGCAATACATTGAGTTTGTGG 6163169 Query 44445 CAGATCGTTTAC-TTTTGGAACTGGGTTGCGATAAACACTATATT----GTACAAAACCC 44499 |||| | || | ||||||||||| | | || | || ||| | ||||| Sbjct 6163168 CAGACAG---ACATGCCGGAACTGGGTT----TTAGCAAGGTTTTCAGAGTAGAGAACCC 6163116 Query 44500 GTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGT 44559 ||||| |||||||| |||||||| || ||| || ||||| ||||| || | || Sbjct 6163115 ATTTGACTTTATGGAGAATATTTCACTGAAAG-----ACGAACTTCTTTGAGAAGAGAGT 6163061 Query 44560 TGGAGAATATCAGCGAATGGGCGT 44583 || |||||| | ||||| || Sbjct 6163060 AAAGGAGTATCAGAGGATGGGAGT 6163037 >seq337 Length=12475526 Score = 113 bits (124), Expect = 4e-20 Identities = 92/109 (84%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 7492467 CAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 7492409 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| |||||||| || || || ||||| |||||| Sbjct 7492408 CATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGAT 7492360 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| | || || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 7490392 GGTGAACGTGTCGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCA 7490333 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 7490332 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 7490273 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 7490272 ATCAGCAGAGATGA 7490259 >seq1303 Length=1912705 Score = 98.7 bits (108), Expect = 8e-16 Identities = 202/297 (68%), Gaps = 4/297 (1%) Strand=Plus/Minus Query 77267 GCCTCCTCATTGCCTTTGTATCCTGCGTGTCCTGGGATGTGCAGCCAGACAACCTCCAGC 77326 || || ||||||||| | |||| | || || || | ||||| ||| || |||| | Sbjct 584767 GCTTCTTCATTGCCTATAAATCCCGAATGACCAGGAACGTGCATCCACTGAATGTCCATC 584708 Query 77327 TCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGA-CAACTGACCCTCCGC- 77384 || | |||| ||||| || ||||| || ||||||| || || | | || Sbjct 584707 CCCTGACTGAGCCTCTCCAGTGCCACGAAGTCCTCTTTGTTGATCACCTCTTTCCCTGCA 584648 Query 77385 CATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGG 77444 | || | |||| || || | |||||| | | ||| || ||||| | |||||| || | Sbjct 584647 CTTGT--CTTCCACCCATTTTCCTTCCAACTTTGAACACAGTTAGTTATACCATTTATAG 584590 Query 77445 TGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCA 77504 | ||||| |||||||| || | ||||| || |||| || | ||| ||||||| | Sbjct 584589 TAAACATACTGTCTGTATACAGAACCAGTTTACTGATGTTTTGAGCCTTTGCTTGTTCAA 584530 Query 77505 GTGCTTTGGATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTC 77561 | |||| | || || |||||||| || | |||||||||||| |||| ||||| Sbjct 584529 TGGTTTTGCAGGCTGCATGGATTTCTGCTCTTTGGTTTGTCTGTCGCCCAGGAAGTC 584473 >seq59 Length=9163144 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| |||| || || ||| | || ||||| || || || |||| |||| Sbjct 409813 TGATGGCACTGCCTCCATGCCATGCTCTCTGCCAGTTCTATGTGGTGAACAGTGAGCTGT 409754 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || ||||| || |||||||| ||||| || || || ||||| || | Sbjct 409753 CCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGTGTGCCTTTCAACATCGCCA 409694 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || ||||||||||| |||||||| ||| Sbjct 409693 GCTACGCCCTGCTCACGTACATGATTGCGCAC 409662 >seq5558 Length=22633747 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 15363981 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 15364040 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| || |||||||| Sbjct 15364041 AACGAGTTTCGGAGTATCAGCG 15364062 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | |||||||| || || | ||| || ||| ||||||| ||| | ||||||| Sbjct 15333629 GGTTTGTCATCTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAACAGGCACAGG 15333688 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 15333689 CTTCCTTCTGGACAGCAGAAGAGGT 15333713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397408853396665