Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq9224 95.1 1e-14 seq4 86.0 8e-12 >seq9224 Length=17174830 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| ||||||||||| || ||| | || |||||||| | || ||| ||| Sbjct 3229342 ACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGTTGTGCAATTCGATCACCC 3229401 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || || || | ||| || || | ||||||||| | | | ||| | |||||| || Sbjct 3229402 TTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTA 3229461 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 |||||| || ||| ||||| || |||||||| ||||| || || ||||| || || Sbjct 3229462 TAATCTTCATTTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGAC 3229521 Query 22815 CTAGGAGATATTCTTCCATA 22834 | |||| || ||||||||| Sbjct 3229522 CGTGGAGCTACTCTTCCATA 3229541 >seq4 Length=12889960 Score = 86.0 bits (94), Expect = 8e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 32674 TGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATAATGA 32733 |||||| || ||| | |||||||| | || ||| | || || | || || || ||| Sbjct 122833 TGTGGTGGTACTTTGTTTCTAAAGGAGTTGAGTATTTGGACACAGTGTTTTTTATTCTGA 122774 Query 32734 GAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTTACTT 32793 |||||||| ||||| ||| || | || || || || || | ||| |||||||| | Sbjct 122773 GAAAGAAAAACAACCAGGTTTCTTTCCTTCATGTGTATCATCACTGTACGATGTTTACCT 122714 Query 32794 TAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 | | ||||| || ||||| ||| ||||||||||||| Sbjct 122713 TGTGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 122677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603107415515920