Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq59 129 5e-25 seq148 114 1e-20 seq170 113 4e-20 seq6335 109 4e-19 seq2224 104 2e-17 seq1314 104 2e-17 seq447 95.1 1e-14 seq2725 87.8 1e-12 >seq59 Length=9163144 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 409651 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 409710 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| ||||| |||||||| ||||| || || ||||| | || | Sbjct 409711 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 409770 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| || | || ||||| ||||| || ||||| || Sbjct 409771 ACATAGAACTGGCAGAGAGCATGGCATGGAGGCAGTGCCATCAG 409814 Score = 118 bits (130), Expect = 9e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| ||||| || ||||||||||||||||| || || || || |||| ||| Sbjct 414111 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTC 414170 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| || Sbjct 414171 CCCTTCTTCTCTGGCGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 414230 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| || || ||||| ||| |||||||| | ||||| || || Sbjct 414231 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTAGATCC 414278 >seq148 Length=5148307 Score = 114 bits (126), Expect = 1e-20 Identities = 189/267 (71%), Gaps = 12/267 (4%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 941425 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGTACTAAATTAATTCTACCCTT 941484 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 941485 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 941544 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557 ||| || ||| |||||||| || | |||| | ||| | || | | | || || || | Sbjct 941545 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 941603 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 110616 || || |||| ||||| || || || || |||||||||||| ||||| || Sbjct 941604 TGAG------CGGCGGCCAGGGCAGGTCCCCATTCTTGCCGATGCCCATGTTCTGG-GAC 941656 Query 110617 GCGGCCACGATACCGTTCAG--AATGA 110641 | || ||||| | ||| || ||||| Sbjct 941657 ACAGCGACGATGCAGTTTAGCAAATGA 941683 >seq170 Length=10713981 Score = 113 bits (124), Expect = 4e-20 Identities = 184/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 4275209 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 4275150 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||||||||| ||||| | ||||||| || Sbjct 4275149 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCGTAATCACCAGATT 4275090 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557 ||| || ||| |||||||| || | |||| | ||| | || | | | || || || | Sbjct 4275089 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 4275031 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 110616 || || |||| ||||| || ||||| || |||||||||||| ||||| || Sbjct 4275030 TGAG------CGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GAC 4274978 Query 110617 GCGGCCACGATACCGTTCAG 110636 | || ||||| | ||| || Sbjct 4274977 ACAGCGACGATGCAGTTTAG 4274958 >seq6335 Length=19669406 Score = 109 bits (120), Expect = 4e-19 Identities = 182/259 (70%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| |||| || || || || | Sbjct 3005397 ATGAGCTCCTTGAGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 3005456 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| ||||| |||||||||||||||| || Sbjct 3005457 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATTATCACCAGATT 3005516 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557 ||| || ||| |||||||| | | |||| ||| | || | | || || || | Sbjct 3005517 CTGTTTACCTTCTACTGAAGAAGGTGTGGTC-GTTCTCTGGAAATACCTGAATTCATTCC 3005575 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACG 110617 | || | | |||| ||||| || || || || ||||||||||||| | | || Sbjct 3005576 TGATTC---AACG--GCCAGGGCAGTTCCCCATTCTTGCCGATGCCCATGTTTTGGGACA 3005630 Query 110618 CGGCCACGATACCGTTCAG 110636 | || ||||| | ||| || Sbjct 3005631 CAGCGACGATGCAGTTTAG 3005649 >seq2224 Length=56261439 Score = 104 bits (114), Expect = 2e-17 Identities = 183/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || | |||||||| |||| || || || | | Sbjct 35981147 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTTTCTGCTGAGAACTAAATTAATTCTACCCTT 35981088 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 35981087 TAAAGGTCAATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 35981028 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557 ||| || ||| |||||||| | | |||| | ||| | || | | | || || || | Sbjct 35981027 CTGTTTACCTTCTACTGAAGAGTTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 35980969 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 110616 | ||| | |||| ||||| || ||||| || ||||||| |||| ||||| || Sbjct 35980968 TGA-----GCA-GCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCTCATGTTCTGG-GAC 35980916 Query 110617 GCGGCCACGATACCGTTCAG 110636 | || ||||| | ||| || Sbjct 35980915 ACAGCGACGATGCAGTTTAG 35980896 >seq1314 Length=2431759 Score = 104 bits (114), Expect = 2e-17 Identities = 165/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 110407 TCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 110466 || |||||||| |||| || || || | | | ||||| |||||| || || |||||| Sbjct 1558852 TCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 1558911 Query 110467 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCG 110526 ||||||||||| ||||||| ||||||| ||||| || ||| |||||||| || | | Sbjct 1558912 AACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCTTCTACTGAAGAGGTTGTG 1558971 Query 110527 GTCAAGGCTC-GAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATC 110585 ||| | ||| | || | | | || || || | || || |||| ||||| || Sbjct 1558972 GTC-ATTCTCTGGAAATATCTGAATTCATTCCTGAG------CGGCGGCCAGGGCAGGTC 1559024 Query 110586 TCCGTTGTTCCCGATGCCCATG-TCTGGACACGCGGCCACGATACCGTTCAG 110636 ||||| || | |||||||||| ||||| || | || ||||| | ||| || Sbjct 1559025 CCCGTTCTTGCGGATGCCCATGTTCTGG-GACACAGCGACGATGCAGTTTAG 1559075 >seq447 Length=39453387 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| ||| || || || | | Sbjct 33138759 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGATCTAAATTAATTCTACCCTT 33138700 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | |||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 33138699 TAAAGGTTGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 33138640 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 110530 ||| || ||| |||||||| || | ||||| Sbjct 33138639 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCA 33138608 >seq2725 Length=139622 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 110392 GGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTC 110451 || || || || || || |||||||| |||| || || || || | | ||||| || | Sbjct 78676 GGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTTTAAAGGTCGATGC 78735 Query 110452 TTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTG 110511 || || || ||||||||||| ||||| |||| ||| ||||||| ||||| || ||| Sbjct 78736 TTCTCAGGAATGGAGAACCAGGTCTTCCTACGCATAATCACCAGATTCTGTTTACCTTCT 78795 Query 110512 ACTGAAGA 110519 |||||||| Sbjct 78796 ACTGAAGA 78803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406262203079436