Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq7002 132 3e-26 seq1670 114 9e-21 seq9446 105 5e-18 seq1299 102 6e-17 seq4780 100 2e-16 seq1470 96.9 2e-15 seq6668 95.1 8e-15 seq3 95.1 8e-15 seq758 91.5 1e-13 seq547 84.2 1e-11 >seq7002 Length=12659153 Score = 132 bits (146), Expect = 3e-26 Identities = 150/200 (75%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||||||||| ||||| ||||| ||| | || || || Sbjct 9467269 AACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTCAAGGTCGAGCCC 9467210 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | ||| | ||| | |||| || ||||| || ||| | || || || Sbjct 9467209 AGTGACACCATGAGAATGTCAAAGCCAAAA-TTCAAGACAAGGAGGGTATCCCACCTGAC 9467151 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | ||||||||||||||||| |||||||| | |||||| | || ||| Sbjct 9467150 CAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTAC 9467091 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || ||||||||||| Sbjct 9467090 AACATCCAGAAAGAGTCCAC 9467071 >seq1670 Length=4706099 Score = 114 bits (126), Expect = 9e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||| ||||||||||||| |||||||||||||| || || ||||| ||||| ||||| || Sbjct 2974021 AAAGTGCAGATTTTCGTGAAAACCCTCACGGGGAAGACCATCACCCTCGAGGTTGAACCC 2974080 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || || ||| Sbjct 2974081 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2974140 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| || |||||||| | ||| ||||| || ||| Sbjct 2974141 CAGCAAAGACTGATCTTTGCTGGCAAGCACCTGGAAGATGGACGTACTTTGTCTGACTAC 2974200 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| ||||| || | ||| | || || || Sbjct 2974201 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 2974238 >seq9446 Length=14842378 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| ||||| || || ||||| ||||| ||||| || Sbjct 8609802 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 8609861 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 || | || | |||| |||| || || || || ||||| | || || | | Sbjct 8609862 TCGAATACGATAGAAAATGTAAAGGCCAAGATCCAGGAGAAGGAAGGAATTCCTCCTGCT 8609921 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 | || | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 8609922 CTGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 8609981 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| ||||| || | ||| | || || || Sbjct 8609982 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 8610019 >seq1299 Length=15376 Score = 102 bits (112), Expect = 6e-17 Identities = 147/202 (73%), Gaps = 9/202 (4%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||||||||| || || ||||| || || |||| ||| Sbjct 1725 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGATTGAGCCCAGT 1784 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGG-TGTACCGCCAGATC 23728 ||||| || | ||| | ||| | |||| || ||||| || || | | || || || | Sbjct 1785 GACACCATTTAGAATGTCAAAGCCAAAA-TTCAAGACAAGGAGGGATATCCCACCTGACC 1843 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT---AGGCGATT 23785 | |||||| | ||| |||| || ||||| ||||| || | |||||| | |||| | Sbjct 1844 AGCAGCGTCTGATACTTGCTGGGAAACAGCTGGAGGATGGCCGCACTCTCTCAGGC---T 1900 Query 23786 ACAACATACAAAAAGAGTCCAC 23807 ||||||| || ||||||||||| Sbjct 1901 ACAACATCCAGAAAGAGTCCAC 1922 >seq4780 Length=17887985 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| | |||||| || || || || ||||| ||||| | ||| || Sbjct 5699141 AAAATGCAGATTTTCGTGATAACCCTTACAGGGAAGACCATCACCCTCGAGGGTGAACCC 5699082 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||||| | |||| || | || || | || ||||| | || || | | Sbjct 5699081 TCGGACACAATAGAAAATGTATAGGCCAAGATCCAGGTTAAGGAAGGAATTCCTCCTGGT 5699022 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 | ||| | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 5699021 CGGCAGAGACCGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTT----GACTAC 5698966 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||||||||| || | ||||| || || || Sbjct 5698965 AATATTCAAAAAGAGTCTACTCTTCATTTTGTATTGAG 5698928 >seq1470 Length=5179915 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 ||||| | || || | ||||||||||| || || |||| || || || || ||| Sbjct 4406810 TGCAGCTCTTTGTGGAGACCCTCACGGGCAAGACCATCATCCTTGAGGTCGAGCCCAGTT 4406751 Query 23672 ACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 |||| ||| | || ||| |||||| |||||||| ||| | || || || || | Sbjct 4406750 ACACCACTGAGAATTTCAAAGCCAAAATTCAAGACAAAGAGGGTATCCCACCTGACCAGC 4406691 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 ||||| | |||||||| ||||| || ||||| || | ||||| | || ||||||| Sbjct 4406690 AGCGTCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCTGCACTCTCTCAGACTACAACA 4406631 Query 23792 TACAAAAAGAGTCCAC 23807 | |||||| ||||||| Sbjct 4406630 TCCAAAAACAGTCCAC 4406615 >seq6668 Length=25972781 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| | ||| || || ||||| || || |||| || Sbjct 3822445 AAAATGCAGATTTTCGTGAAAACCCTAAGGGGGAAGACTATCACCCTTGAGATTGAACCC 3822504 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| |||| || || || || ||||| | || || ||| Sbjct 3822505 TCAGATACGGCAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3822564 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||| | ||||||||||||| ||| ||||| || | | Sbjct 3822565 CAGCAAAGACTGATCTTTGCTGGCGAGCAACTGGAAGACGGACGTACTTTGTCTGACTGC 3822624 Query 23788 AACATACAAAAAGAG 23802 ||||| ||||| ||| Sbjct 3822625 AACATTCAAAAGGAG 3822639 >seq3 Length=16319837 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||| || || || || ||||| || || ||||| ||| Sbjct 4626191 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 4626250 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || |||| | | || || ||||| | || || || | Sbjct 4626251 TGACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGATAAGGAAGGCATTCCTCCCGACC 4626309 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || |||||||| || || |||||||| | ||||| | || |||| Sbjct 4626310 AGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACA 4626369 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 4626370 ACATCCAGAAAGAGTCCAC 4626388 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||||| ||| || || ||||| || || || || ||| | Sbjct 14926399 ATGCAGATCTTTGTGAACACCCTCATGGGCAAGACCATCACCCTTGAGGTGGAGCCCAGG 14926458 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| ||| ||| | ||| | ||| | ||||| | || | | ||| || || Sbjct 14926459 GACACCACTGAGAATGTCAAAGCCGAAA-TCCAAGACAAGTAGGGCATCCTGCCTGACCA 14926517 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || | |||||||| |||||||| | ||| || | |||| | | || || || Sbjct 14926518 GCAGTGTCTGATATTTGCGGGCAAACAGCCGGAGGATGGCCGCAGTCTCTCAGACTAGAA 14926577 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 14926578 CATCCAGAAAGAGTCCAC 14926595 >seq758 Length=2790677 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| || || || || ||||| || || || || || Sbjct 2564985 AAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAGCCC 2565044 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | || ||||| || || ||||| | || || || Sbjct 2565045 AGTGACACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCCGAC 2565104 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| || |||||||| | |||||| | || ||| Sbjct 2565105 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTAC 2565164 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 2565165 AACATCCAGAAAGAGTCGAC 2565184 >seq547 Length=9034655 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| || || |||||||| || || | ||| Sbjct 8022648 ATGCAGATCTTTGTGAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCAAGCCCAGT 8022707 Query 23671 GACACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| ||| || | ||| | |||| || ||||| || ||| | || || || || Sbjct 8022708 GACACCAATGAGGATGTCAAAGCCAAAA-TTCAAGACAAGGAGGGTATCCCACCTGACCA 8022766 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | ||| ||||||||||||| ||||| || | || ||| | || ||| | Sbjct 8022767 GCAGCATCTGATACTTGCCGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTACGA 8022826 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||||| Sbjct 8022827 CATCTGGGAAGAGTCCAC 8022844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337969504984364