Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq59 140 3e-28 seq170 109 4e-19 seq148 109 4e-19 seq6335 104 2e-17 seq2224 100 2e-16 seq1314 98.7 8e-16 seq447 86.0 5e-12 >seq59 Length=9163144 Score = 140 bits (154), Expect = 3e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || ||| Sbjct 409651 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 409710 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || || |||||||| |||||||| || ||||| | || | Sbjct 409711 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 409770 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | |||||||| ||||| || ||||| ||| Sbjct 409771 ACATAGAACTGGCAGAGAGCATGGCATGGAGGCAGTGCCATCAGA 409815 Score = 102 bits (112), Expect = 7e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||| ||| || ||||| ||| ||| Sbjct 414133 AAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCTCTGGCGGAGAAC 414192 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||||||||||| ||| || ||||| |||||||| || || ||||| Sbjct 414193 CCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 414252 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || |||||||| | ||||| || || Sbjct 414253 GACAGCTCTTTAGCATTTGTAGATCC 414278 >seq170 Length=10713981 Score = 109 bits (120), Expect = 4e-19 Identities = 183/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| |||| || | || | | Sbjct 4275209 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 4275150 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||||||||| ||||| | ||||||| || Sbjct 4275149 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCGTAATCACCAGATT 4275090 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440 ||| |||||| | ||||| || | |||| | ||| | || | | | || || || Sbjct 4275089 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATT-- 4275033 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499 || | ||| |||| ||||| || ||||| || |||||||||||| ||||| || Sbjct 4275032 ----CCTGAGCGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GAC 4274978 Query 114500 GCTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 4274977 ACAGCGACGATGCAGTTTAG 4274958 >seq148 Length=5148307 Score = 109 bits (120), Expect = 4e-19 Identities = 188/267 (70%), Gaps = 12/267 (4%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| |||| || | || | | Sbjct 941425 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGTACTAAATTAATTCTACCCTT 941484 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 941485 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 941544 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440 ||| |||||| | ||||| || | |||| | ||| | || | | | || || || Sbjct 941545 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATT-- 941601 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499 || | ||| |||| ||||| || || || || |||||||||||| ||||| || Sbjct 941602 ----CCTGAGCGGCGGCCAGGGCAGGTCCCCATTCTTGCCGATGCCCATGTTCTGG-GAC 941656 Query 114500 GCTGCCACGATACCGTTCAG--AATGA 114524 | || ||||| | ||| || ||||| Sbjct 941657 ACAGCGACGATGCAGTTTAGCAAATGA 941683 >seq6335 Length=19669406 Score = 104 bits (114), Expect = 2e-17 Identities = 181/259 (70%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| |||| || | || || | Sbjct 3005397 ATGAGCTCCTTGAGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 3005456 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| |||||||||||||||| || Sbjct 3005457 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATTATCACCAGATT 3005516 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440 ||| |||||| | ||||| | | |||| ||| | || | | || || || | Sbjct 3005517 CTGTTTACCTTCTACTGAAGAAGGTGTGGTC-GTTCTCTGGAAATACCTGAATTCATTCC 3005575 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACG 114500 | ||| || |||| ||||| || || || || ||||||||||||| | | || Sbjct 3005576 --TGATTCAACG---GCCAGGGCAGTTCCCCATTCTTGCCGATGCCCATGTTTTGGGACA 3005630 Query 114501 CTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 3005631 CAGCGACGATGCAGTTTAG 3005649 >seq2224 Length=56261439 Score = 100 bits (110), Expect = 2e-16 Identities = 182/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || | |||||||| |||| || | || | | Sbjct 35981147 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTTTCTGCTGAGAACTAAATTAATTCTACCCTT 35981088 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 35981087 TAAAGGTCAATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 35981028 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440 ||| |||||| | ||||| | | |||| | ||| | || | | | || || || | Sbjct 35981027 CTGTTTACCTTCTACTGAAGAGTTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 35980969 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499 || || || |||| ||||| || ||||| || ||||||| |||| ||||| || Sbjct 35980968 TGAG---CAGCG---GCCAGGGCAGGTCCCCGTTCTTGCCGATGCTCATGTTCTGG-GAC 35980916 Query 114500 GCTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 35980915 ACAGCGACGATGCAGTTTAG 35980896 >seq1314 Length=2431759 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 114290 TCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 114349 || |||||||| |||| || | || | | | ||||| |||||| || || |||||| Sbjct 1558852 TCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 1558911 Query 114350 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCTCTGTCGGAAGACGTAGCG 114409 ||||||||||| ||||||| ||||||| ||||| |||||| | ||||| || | | Sbjct 1558912 AACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCTTCTACTGAAGAGGTTGTG 1558971 Query 114410 GTCAAGGCTC-GAAAGTGTTTAAAATCTTTGCAAAGTCTCACCGGATGCCACGGCAGATC 114468 ||| | ||| | || | | | || || || || | ||| |||| ||||| || Sbjct 1558972 GTC-ATTCTCTGGAAATATCTGAATTCATT------CCTGAGCGGCGGCCAGGGCAGGTC 1559024 Query 114469 TCCGTTGTTCCCGATGCCCATG-TCTGGACACGCTGCCACGATACCGTTCAG 114519 ||||| || | |||||||||| ||||| || | || ||||| | ||| || Sbjct 1559025 CCCGTTCTTGCGGATGCCCATGTTCTGG-GACACAGCGACGATGCAGTTTAG 1559075 >seq447 Length=39453387 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| ||| || | || | | Sbjct 33138759 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGATCTAAATTAATTCTACCCTT 33138700 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | |||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 33138699 TAAAGGTTGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 33138640 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCA 114413 ||| |||||| | ||||| || | ||||| Sbjct 33138639 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCA 33138608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406115020540438