Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq37 269 2e-67 seq237 165 7e-36 seq9224 132 4e-26 seq170 109 5e-19 seq4 100 2e-16 seq337 91.5 1e-13 seq5558 89.7 4e-13 seq1170 87.8 2e-12 seq3558 86.0 5e-12 seq1681 84.2 2e-11 seq1336 84.2 2e-11 seq70 84.2 2e-11 >seq37 Length=10148950 Score = 269 bits (298), Expect = 2e-67 Identities = 521/760 (69%), Gaps = 18/760 (2%) Strand=Plus/Plus Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||| || ||||| || || || || |||| || ||| || || ||||| | | Sbjct 6163161 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 6163220 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 |||||| | || | || | || || |||||||| || || | | ||| | || Sbjct 6163221 CACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTTC 6163280 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558 | ||||| | || | ||||||| | ||| | || |||| | || |||||||| Sbjct 6163281 TCTTATTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAATC 6163340 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 ||| || ||||| || |||| ||||| ||||| || ||||| || | || ||||| | Sbjct 6163341 ACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAG 6163400 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 |||| || || ||||| ||||| | ||||| | ||||||||| |||||||| | Sbjct 6163401 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGCCTTCCGC 6163457 Query 4679 GGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTA 4737 || ||||| |||| | || ||| | | |||| |||||||| |||||| | | Sbjct 6163458 TGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCT-GCTTTGTCCCCAATCCAGTGCA 6163516 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATT 4794 | ||||| | || || ||||| || || || || || | || || || || |||| Sbjct 6163517 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 6163576 Query 4795 TACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAA 4853 |||| || |||| |||| || |||||||| || || | ||||||||| ||||| Sbjct 6163577 CCCTTTCTT----TGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAA 6163632 Query 4854 TGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACT 4913 ||||| ||||| || ||||| || || || | || || | |||||||| || |||||| Sbjct 6163633 TGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACT 6163692 Query 4914 TCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAAC 4973 || | | | ||| || || |||||| | |||||||| || ||||| || ||||| || Sbjct 6163693 TCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAA 6163751 Query 4974 GCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA 5033 ||| |||||| |||||||| || || || ||||| || || ||||| | |||| Sbjct 6163752 ACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGAATTCCCAGT--GCCAAA 6163809 Query 5034 --TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACA 5091 || || | || || || || | ||||| || || |||||||| || || |||| Sbjct 6163810 TGTCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACA 6163869 Query 5092 TAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 | ||| |||||| | |||| || || | |||||||| Sbjct 6163870 TCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 6163909 >seq237 Length=7777549 Score = 165 bits (182), Expect = 7e-36 Identities = 329/483 (68%), Gaps = 11/483 (2%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| | ||| || ||||| || || |||||||| ||||| || ||||| || | Sbjct 5488340 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 5488399 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | ||| || || ||||| ||||| ||||| || ||||||||||| Sbjct 5488400 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 5488459 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTA 4727 ||| ||| || |||||| ||| | | || || | | |||||| | Sbjct 5488460 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 5488519 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 ||||| || |||| || || ||||| || || || ||||| || || || Sbjct 5488520 ATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTCCAATGGCATTG 5488578 Query 4788 AATA---ATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 || | ||| |||| || || |||| ||| | ||||| || || || |||| Sbjct 5488579 AAGAGAAATTCCCTTTCTT----TGTTATCTTTAATGT--GTGTCAATAAGGAGACTATT 5488632 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 || ||||||||||| |||||| ||||||| || || || || ||||| | |||||| Sbjct 5488633 TATGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGT 5488692 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 | |||| ||| | | |||| ||| || |||||||| | |||||| || |||| || Sbjct 5488693 AATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGC 5488752 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 |||||| || |||| || || |||||||| || ||| |||||||| || || ||| Sbjct 5488753 TGCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCA 5488812 Query 5024 GTG 5026 ||| Sbjct 5488813 GTG 5488815 >seq9224 Length=17174830 Score = 132 bits (146), Expect = 4e-26 Identities = 163/220 (74%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||||| || | | ||||| ||||| || ||| || |||| Sbjct 3229587 AGCTCTTGTGAAAACGGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAGTAGC 3229528 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | || || ||||| | ||||||||||| || || || || ||||| ||| || Sbjct 3229527 TCCACGGTCAGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAAATGA 3229468 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| ||||||||||| ||||| |||| ||||||||||||| |||||| | | || Sbjct 3229467 AGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTGAAG 3229409 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 | |||||||| ||| | | || ||||| ||||||||| Sbjct 3229408 --TCAAAAAGGGTGATCGAATTGCACAACTCATTTGCGAA 3229371 >seq170 Length=10713981 Score = 109 bits (120), Expect = 5e-19 Identities = 209/304 (69%), Gaps = 7/304 (2%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||||| || | | ||||| ||||| || ||| || |||| Sbjct 2521581 AGCTCTTGTGAAAACGGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAGTAGC 2521640 Query 31825 TCCTAGATCTGGATTGGCA-GTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATT 31883 ||| || || ||||| | ||||||||||| || || || || ||||| |||||| Sbjct 2521641 TCCACAGTCAGGCTTGGCTTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGATG 2521700 Query 31884 CAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACA 31940 ||| ||||||||||| ||||| ||| ||||||| ||||| |||||| | | | Sbjct 2521701 AAGATTATAGAGGAAATGTTGGTGGTGTACTGTTTAACTTTGGCAAAGAAAAGT-TTGAA 2521759 Query 31941 GTATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAA 32000 | | |||||| | ||| | | || || || ||||||||| || || ||| Sbjct 2521760 G--TCAAAAAGTGTGATCGAATTGCACAGCTCATTTGCGAACGGATTTTTTATCCAGAAA 2521817 Query 32001 TAGAAGTAGCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCG 32060 |||||| || | | | | ||| |||| |||| || | ||| ||||| || || | Sbjct 2521818 TAGAAGAAGTTCAAGCTTTGGATGACACGGAAAGGGGTTCAGGAGGTTTTGGTTCCACTG 2521877 Query 32061 GAAA 32064 |||| Sbjct 2521878 GAAA 2521881 >seq4 Length=12889960 Score = 100 bits (110), Expect = 2e-16 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCA--GGGTGCTACGGACGAATAGCTCCTAGAT 31832 ||||| || ||||| || || | ||||| ||||| || ||| || ||| ||| | | Sbjct 5654595 AAAACAGACATTCAGATAGCTCTTCCTTCTCTGGGTGTTATGGAAGAGTAGTTCCATGGT 5654536 Query 31833 CTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATA 31892 |||| ||||| | ||||||||||| || || || || ||||| ||||| | | |||| Sbjct 5654535 CTGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGACGAAAATTATA 5654476 Query 31893 GAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||||||| |||| |||| ||||||||||||| Sbjct 5654475 GAGGAAATATTGGTGTTGTACTGTTTAATTTTGG 5654442 >seq337 Length=12475526 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || |||||||| || || || |||||||||||||||||||| ||||| || Sbjct 7492358 GGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATG 7492417 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | |||||||| | |||||||| | | ||||| Sbjct 7492418 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 7492475 >seq5558 Length=22633747 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||||||||| || || | Sbjct 15340175 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 15340119 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| || ||||||| || || | ||||| || |||||||| || | ||| || | Sbjct 15340118 TGTGAGAGATGAAGTACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 15340059 Query 5041 TTAAATCAAC 5050 ||| || || Sbjct 15340058 ATAAGTCGAC 15340049 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 15364059 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 15364000 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 15363999 ATAAAATCAAAAGGATT 15363983 >seq1170 Length=3009235 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834 ||||| | ||||| || || | ||||| || || || ||| || | |||| | ||| Sbjct 2957233 AAAACGAACATTCAGATACCTCTTCCTTCTGGATGTTATGGAGGAGTGGCTCT--GGTCT 2957176 Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894 || |||| | ||||||||||| || | || || ||||| |||||| ||| |||| | Sbjct 2957175 GGCCTGGCTGCAAAACACTTTATAGATATAGGAGCTGGTGTCATAGATGAAGAGTATACA 2957116 Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||||| ||||| | ||| || |||||||||| Sbjct 2957115 GGAAATGTTGGCACTGTCCTGCTTAATTTTGG 2957084 >seq3558 Length=16468325 Score = 86.0 bits (94), Expect = 5e-12 Identities = 166/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 31771 AGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAG 31830 ||| |||| | ||||| || || | ||||| |||| || || || ||||| | Sbjct 1655396 AGTGAAAATGGGCATTCAGATAGCTCTTCCTTCTGGGTTTTATAGAAGAGGGGCTCCATG 1655337 Query 31831 ATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTA 31890 ||||| ||||| | |||||||||||||| || || | ||||| ||||| ||| || Sbjct 1655336 GTCTGGCTTGGCTGCAAAACACTTTATCGATGTAGGAACTGGTGTCATAGACGAAGATTA 1655277 Query 31891 TAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAA 31947 ||||||| ||||| ||| ||||||||||||| |||||| | || ||| || Sbjct 1655276 CTGAGGAAATGTTGGTGCTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTAAAGTCAGAA 1655218 Query 31948 AAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAATAGAAGT 32007 ||| | ||| | | || || || ||||| ||| ||| | || ||||||||| Sbjct 1655217 AAA--GTGATCGCATTGCACAGCTCATTTGTGAATGAATTTTTAATCCAGAAATAGAAGA 1655160 Query 32008 AG 32009 || Sbjct 1655159 AG 1655158 >seq1681 Length=2305164 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/180 (72%), Gaps = 7/180 (4%) Strand=Plus/Plus Query 31776 AAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTG 31835 |||| || ||| | || || ||||| ||| | ||| || ||||||| ||| ||| Sbjct 1940899 AAACAGACATTTAGATAGCTCCTCCTTCCACGTGTTGTGGAAGAGTAGCTCC-AGA-CTG 1940956 Query 31836 GATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAG 31895 | ||||| | ||||||||||| || || || | ||||| ||||| ||| || |||| Sbjct 1940957 GCTTGGCTGCAAAACACTTTATAGATGTAGGAGGTGGTGTCATAGAGGAAGATTACAGAG 1941016 Query 31896 GAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAAAAGG 31952 |||| ||||| ||| ||||||||||||| |||||| || | ||| |||||||| Sbjct 1941017 GAAATGTTGGTGCTGTACTGTTTAATTTTGGCAAAGAAAAGTC-TGAAGT-CAAAAAAGG 1941074 >seq1336 Length=15368434 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/170 (71%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825 || || || |||| || ||||| || | | |||| ||| || ||| || ||||| Sbjct 3172930 GCTCTTGTGAAAATGGACATTCAGATAGCACTTTCTTCTCGGTATTATGGAAGAGTAGCT 3172871 Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885 || | ||||| ||||| | |||||| || | || || || || ||||| | |||| | Sbjct 3172870 CCACGGTCTGGCTTGGCTGCAAAACACGTTGTAGATGTAGGAGCTGGTGTCACAGATGAA 3172811 Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 || ||||||||||| |||| |||| | ||||||||||| |||||| Sbjct 3172810 GATTATAGAGGAAATATTGGTGTTGTAGTCTTTAATTTTGGCAAAGAAAA 3172761 >seq70 Length=10360153 Score = 84.2 bits (92), Expect = 2e-11 Identities = 172/252 (68%), Gaps = 8/252 (3%) Strand=Plus/Plus Query 34294 AAAGGAAACAGCAAAAAC---ATACAAATGGTTCAGTATATTTATAAAAACACATCTTCT 34350 |||| ||||| || ||| | ||||||||| || |||||||| ||| ||||| || | Sbjct 958587 AAAGAAAACACAAAGAACGACAAACAAATGGTCCAATATATTTACAAATACACAAGTTAT 958646 Query 34351 TACGGAGATCCTCTAATGTTGATGAAAAGCGCTAGAAGTAACTGCTGGGATAAAACCGCT 34410 | | ||| || || |||||||||||||||||| || || ||| |||| || Sbjct 958647 CCTG---ACCCTATACTGCTGATGAAAAGCGCTAGAAATAGTTGTTGGTCTAAAGATGCA 958703 Query 34411 GAGTACGGTCTTTACTCAGTATATCAAGGAGGAATACACTATCTaaaaaaaGGAGATAGT 34470 || ||||| || || || | |||||||| ||| || | || || |||| || || Sbjct 958704 GAATACGGACTCTATTCCATCTATCAAGGGGGATTATTTGAGCTTAAGAAAGATGACAGA 958763 Query 34471 GTGTTTGTAACAGTTACTAACAAAAACTTTTTAGCGATGGACTACAGAAGTGA-CTATTT 34529 | ||||| | || || || | |||| ||| |||||| | |||| | || ||| Sbjct 958764 ATTTTTGTTTCTGTAACAAATGAGCACTTGATAGACATGGACCA-TGAAGCCAGCTTTTT 958822 Query 34530 TGGAGCGTTTTT 34541 || || ||||| Sbjct 958823 CGGGGCCTTTTT 958834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426998942976089