Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq225 183 4e-41 seq381 120 4e-22 >seq225 Length=41818005 Score = 183 bits (202), Expect = 4e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| |||| |||||| ||||| || ||||| || ||||||||||| Sbjct 16434537 GTCTGGAACAACTGCTCATCACCCCATTCCGGATGCTCCTGTTTAAGCACATCGCACACT 16434596 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||| | |||||||| ||||| |||||||| || ||||| ||||| ||||| Sbjct 16434597 CTGTTGTGTTCTCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 16434656 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | |||| | || || |||| ||||| |||||||| | Sbjct 16434657 ACCTCCTGCCCCACAGCAAACCGCAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 16434716 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 |||| |||||||| | ||| |||||||| || || ||||| |||| Sbjct 16434717 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 16434765 Score = 178 bits (196), Expect = 2e-39 Identities = 233/323 (72%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 8264 TTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTA 8323 |||| |||||| ||| ||||| | ||| | | || ||||| ||||| ||||| | Sbjct 16432176 TTGATGAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTG 16432235 Query 8324 CAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAG 8383 |||| ||||||||||| | || | |||| ||| || ||||| ||||| || || Sbjct 16432236 CAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAAA 16432295 Query 8384 GTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAG 8443 ||||| ||||||||||| | || || || || || || |||| || ||||| | |||| Sbjct 16432296 GTGCTTGGCTTCCAGTAGGCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGAG 16432355 Query 8444 AACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCC 8503 ||||| || || | || | ||| ||||||| |||||||| | ||||| |||||||| Sbjct 16432356 AACGGTGCTCCAACTTCTACCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCT 16432415 Query 8504 ACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCG 8563 |||| | | | |||||||||||||| |||| ||| || || || || | || Sbjct 16432416 ACCAGAAGGGCAGGATACAGCTCCACAGCATCGATGTCACCATAGAGTGCTTCCAACTCT 16432475 Query 8564 GCAGCGATCTCCTTTTCTCCTGT 8586 |||| || |||||||||||||| Sbjct 16432476 GCAGACATTTCCTTTTCTCCTGT 16432498 Score = 132 bits (146), Expect = 7e-26 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 16435997 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 16436056 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| |||||||| || ||| |||| || |||||||| | ||| |||||||||||||| Sbjct 16436057 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGATC 16436116 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || |||| | || | |||||| ||||||||||| Sbjct 16436117 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 16436154 Score = 102 bits (112), Expect = 1e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 9906 AGTCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTG 9965 |||||||||| || || | |||||||| || || | ||| || ||||| || || | Sbjct 16436606 AGTCACCTTTCACACCCAAGGGAGTTGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTGG 16436665 Query 9966 CGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATA 10025 ||||||||||| || ||||| |||||||||||| ||| | ||||| | ||||| Sbjct 16436666 TATAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAAG 16436725 Query 10026 TGGGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 | || || ||||||||||||| ||||| |||| Sbjct 16436726 TTGGTGGACTGTCAATCAAATGTGATCTGGCTGA 16436759 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| | ||||| ||||| || | ||||||||| || || | Sbjct 16433944 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 16434003 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | | ||| || |||||||||| || ||| | |||| || || | || ||| | Sbjct 16434004 AGTAATATAGAGTTGTTGTAGATAAACTGTTGA--TAGTTGTATTTCTGGTCATGAATTT 16434061 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 ||| || |||| || | |||||||||||| | |||||||||| | | |||| Sbjct 16434062 GAAAGTTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTGTTAAACTCAGCAGCAATAC 16434121 Query 9122 GATTTTGGTACTGGAA 9137 |||||||||||||||| Sbjct 16434122 GATTTTGGTACTGGAA 16434137 >seq381 Length=9870344 Score = 120 bits (132), Expect = 4e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||||||||| || |||| || || || || ||||| |||||||||||| |||| | Sbjct 9550395 TCTTGACGATGTTAAAGCCCATCTCGCCACCAAAAGTGCTTGGCTTCCAGTACTCCGGAG 9550336 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| ||| | | ||| || |||||||| || |||||||| | ||| | || | Sbjct 9550335 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 9550276 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||| | ||| ||| || |||||| | | | || | ||| | ||||| Sbjct 9550275 TCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAAGAAGCAGCCCAGGGTAGAACTCCA 9550216 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || | |||||| || || || | || || || |||||||| |||||| Sbjct 9550215 ACGCGTCAATGTCTCCATACAGCTCCTCCAACTCCGCTGCCATCTCCTTCTCTCCT 9550160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716789582976320