Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1670 158 3e-33 seq9446 141 2e-28 seq758 141 2e-28 seq7446 136 1e-26 seq4780 122 2e-22 seq6668 118 3e-21 seq5557 116 9e-21 seq359 113 1e-19 seq2225 107 5e-18 seq891 100 7e-16 seq5335 93.3 1e-13 seq1 86.0 2e-11 >seq1670 Length=4706099 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| || || || |||||||||||||| ||| ||| || Sbjct 2974027 CAGATTTTCGTGAAAACCCTCACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGAT 2974086 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || |||||||| ||||| || |||||| Sbjct 2974087 ACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 2974146 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || || | Sbjct 2974147 AGACTGATCTTTGCTGGCAAGCACCTGGAAGATGGACGTACTTTGTCTGACTACAATATT 2974206 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| |||||||| Sbjct 2974207 CAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 2974241 >seq9446 Length=14842378 Score = 141 bits (156), Expect = 2e-28 Identities = 166/224 (74%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||||||||| || || || || || |||||||||||||| ||| Sbjct 8609802 AAAATGC---AGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAA 8609858 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| | || || || || || || ||||| ||||| || |||||||| ||||| Sbjct 8609859 CCCTCGAATACGATAGAAAATGTAAAGGCCAAGATCCAGGAGAAGGAAGGAATTCCTCCT 8609918 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 | | |||| |||| ||||| || || || || || ||||||||| | ||| | | || Sbjct 8609919 GCTCTGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGAC 8609978 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || | ||||| || || || || |||||||| |||||||| Sbjct 8609979 TACAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 8610022 >seq758 Length=2790677 Score = 141 bits (156), Expect = 2e-28 Identities = 158/208 (76%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||||||||| || || || || || |||||||| ||| |||| || ||| Sbjct 2565448 CAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAG-TGGA--GCCCAGTG 2565504 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| || || || ||||| ||||| |||||||| ||||| || ||||||| Sbjct 2565505 ACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCCGACCAGC 2565564 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | |||||| | || || ||| Sbjct 2565565 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACA 2565624 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || ||||| ||||| || || Sbjct 2565625 TCCAGAAGGAGTCAACCCTGCACCTGGT 2565652 Score = 132 bits (146), Expect = 1e-25 Identities = 160/215 (74%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || |||||||| || || || || || || |||||||| |||| Sbjct 2564980 AGGTCAAAATGC---AGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTTGAGG 2565036 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||| || || || || || ||||| || ||||| || Sbjct 2565037 TGGA--GCCCAGTGACACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCAT 2565094 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| | || ||||| || || || ||||| |||||||| | ||||| Sbjct 2565095 TCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 2565154 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | | || || ||| |||| ||||| || || |||| Sbjct 2565155 TTCTGACTACAACATCCAGAAAGAGTCGACCCTGC 2565189 Score = 102 bits (112), Expect = 2e-16 Identities = 151/208 (73%), Gaps = 7/208 (3%) Strand=Plus/Plus Query 177921 CTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG-TGGAAAGCTC 177979 || || || |||||||| || || || || || || |||||||| |||| || || Sbjct 2565218 CTGCAGATCTTCGTGAAGAC-CTGACCGGCAAGACCATCACCCTTGAGGGTGCCCAGT-- 2565274 Query 177980 AGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG-AATCCCTCCGGACC 178038 ||||||||||| || || || || || ||||| || ||||| | |||| || |||| Sbjct 2565275 -GACACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCCCGACC 2565333 Query 178039 AGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATA 178098 |||| | || ||||| || || || ||||| |||||||| | |||||| | || || | Sbjct 2565334 AGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACA 2565393 Query 178099 ACGTCCAAAAAGAATCAACACTGCATCT 178126 || ||| | |||| || || ||||| || Sbjct 2565394 ACATCC-AGAAGAGTCGACCCTGCACCT 2565420 >seq7446 Length=17224310 Score = 136 bits (150), Expect = 1e-26 Identities = 159/212 (75%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || ||| | || ||||| |||||||| ||||| || || ||| Sbjct 13347107 CAGATCTTTGTGAAGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCGA--GCCCAGTG 13347050 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||||||| || ||||| ||||| || || ||||| || ||||||| Sbjct 13347049 ACACCATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAGC 13346990 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || || ||| | |||||||| |||||||| | ||||| | || || ||| Sbjct 13346989 AGCGTCTGATATTTGCCAGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAACA 13346930 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||| |||| || || ||||| || || ||| Sbjct 13346929 TCC---AAGAGTCCACCCTGCACCTGGTGTTG 13346901 >seq4780 Length=17887985 Score = 122 bits (134), Expect = 2e-22 Identities = 162/224 (72%), Gaps = 7/224 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||||| ||| || ||||| || || ||||||||||||| ||| Sbjct 5699141 AAAATGC---AGATTTTCGTGATAACCCTTACAGGGAAGACCATCACCCTCGAGGGTGAA 5699085 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| ||||| || || || || | ||||| |||| || |||||||| ||||| Sbjct 5699084 CCCTCGGACACAATAGAAAATGTATAGGCCAAGATCCAGGTTAAGGAAGGAATTCCTCCT 5699025 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 | | ||| ||| ||||| || || || || || ||||||||| | ||| | || Sbjct 5699024 GGTCGGCAGAGACCGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTT----GAC 5698969 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || | |||||||| || || || ||| |||| |||||||| Sbjct 5698968 TACAATATTCAAAAAGAGTCTACTCTTCATTTTGTATTGAGACT 5698925 >seq6668 Length=25972781 Score = 118 bits (130), Expect = 3e-21 Identities = 161/224 (72%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||||||||| || | || || || |||||||| ||| | ||| Sbjct 3822445 AAAATGC---AGATTTTCGTGAAAACCCTAAGGGGGAAGACTATCACCCTTGAGATTGAA 3822501 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 |||||| || || || || || ||||| ||||| || |||||||| ||||| Sbjct 3822502 CCCTCAGATACGGCAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCT 3822561 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || |||||| |||| ||||| || || | || || ||||| ||| | ||| | | || Sbjct 3822562 GATCAGCAAAGACTGATCTTTGCTGGCGAGCAACTGGAAGACGGACGTACTTTGTCTGAC 3822621 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | ||| | ||||| || | || || |||||| | |||||||| Sbjct 3822622 TGCAACATTCAAAAGGAGCCTACCCTTCATCTTTTGTTGAGACT 3822665 >seq5557 Length=63123227 Score = 116 bits (128), Expect = 9e-21 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || |||||||| || || |||||||||||||| | ||| || | Sbjct 51838389 CAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCG--AGCCCAGTG 51838332 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||| ||||| ||||| || ||||| | ||| || || ||||| | ||||||| Sbjct 51838331 ACACCACTGAGAATGTCAAGGCCAAAATTCAAGCCAAGGAGGGCATCCCACTTGACCAGC 51838272 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || || || || |||||||| || ||||| | ||||| | || | ||| Sbjct 51838271 AGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTGCAACA 51838212 Query 178102 TCCAAAAAGAATCAACACTGCATCT 178126 |||| ||||| || | ||||| || Sbjct 51838211 TCCAGAAAGAGTCCATCCTGCACCT 51838187 >seq359 Length=9844545 Score = 113 bits (124), Expect = 1e-19 Identities = 163/226 (72%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||| |||||| || ||||| || || |||||||||||||| ||| Sbjct 8207938 AAAATGC---AGATTTTCACGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAA 8207882 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 |||||| || | | | || || || ||||| ||||| || |||||||| ||||| Sbjct 8207881 CCCTCAGATACGA-CAAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCT 8207823 Query 178035 GACCAGCAACGACTTATCTTCGCCGG--AAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 || |||| |||| ||||| || | ||| || || || |||||| | ||| | | | Sbjct 8207822 GATGGGCAAAGACTGATCTTTGCTAGCAAAAGCAACTGGAGGATGGATGTACTTTGTCTG 8207763 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | || || | ||||| || || || || ||||||| |||| ||| Sbjct 8207762 ACTA-CACATTCAAAAGGAGTCTACTCTTCATCTTGCGTTGACACT 8207718 >seq2225 Length=31540782 Score = 107 bits (118), Expect = 5e-18 Identities = 151/204 (74%), Gaps = 10/204 (5%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGA-GGTGGAAAGCTCAG- 177981 || || ||||||||| | || || || || || |||||||| || |||||| || ||| Sbjct 23425192 CAGATCTTCGTGAAACC-CTGAC-GGCAAGACCATCACCCTGGAAGGTGGA--GCCCAGT 23425247 Query 177982 -ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAA-GAAGGAATCCCTCCGGACCA 178039 |||||||||| || || || ||||| ||||| ||| ||||| ||||| || |||| Sbjct 23425248 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGGAAGGCATCCCCCCCAACCA 23425307 Query 178040 GCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 ||| | || ||||| || || || ||||| || |||| | |||||| | || || || Sbjct 23425308 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGA--ATGGCCGCACTCTTTCTGACTACAA 23425365 Query 178100 CGTCCAAAAAGAATCAACACTGCA 178123 | |||| || || ||||| ||||| Sbjct 23425366 CATCCAGAAGGAGTCAACCCTGCA 23425389 >seq891 Length=31049660 Score = 100 bits (110), Expect = 7e-16 Identities = 159/223 (71%), Gaps = 9/223 (4%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || |||||||| | || || | || || || |||| |||| Sbjct 21158134 AGGTCAAAATGC---AGATCTTCGTGAAGAGCCTTACCTGCAAGACCATTGCCCTTGAGG 21158078 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||| || || || ||||| ||||| || ||||| || Sbjct 21158077 TGGA--GCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 21158020 Query 178028 CCCTCCGGACCAGCA-ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTC 178086 | || || ||||| ||| || ||| | || | || ||| | ||||||| | | || Sbjct 21158019 TCTCCCCGAGCAGCAGACG-CTCATCCTTGCAGTCAAGCAGGTGGAAGATGACCGCATTC 21157961 Query 178087 TTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || | || |||||| |||| ||||| || || ||||| ||||| Sbjct 21157960 TTTCTGACTATAACATCCAGAAAGAGTCGACCCTGCACCTTGT 21157918 >seq5335 Length=15219753 Score = 93.3 bits (102), Expect = 1e-13 Identities = 151/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||| | ||| | ||||| || || |||||||||||||| ||| || Sbjct 13023184 CAGATTTTCATAAAA----TTACAGGGAAGACCATCACCCTCGAGGTCGAACCTGTGGAT 13023239 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| |||| | | ||||||| ||||| || |||| Sbjct 13023240 ACGATAGAAAATGTAAAGGCCAAGATCCAGG--ATACAAGGAATTCCTCCTGATGAGCAG 13023297 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || ||| | Sbjct 13023298 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTGT--CTGACTACAACATT 13023355 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | ||| || | || || |||||||| |||||||| Sbjct 13023356 CGAAAGGAGCCCACTCTTCATCTTGTGTTGAGACT 13023390 >seq1 Length=22034461 Score = 86.0 bits (94), Expect = 2e-11 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177928 TTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCA 177987 ||||| ||| ||| || ||||| || || ||||||||||||| ||| || || || Sbjct 13198652 TTTTCCTGAGAACCCTTACAGGGAAGACCATCACCCTCGAGGCTGAACCCTTGGATACGG 13198593 Query 177988 TCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGAC 178047 | || | | | ||||| | || || |||||||| ||||| | |||||| ||| Sbjct 13198592 TAGAAGATGGAAGGGCCAAGATCCGGGGTAAGGAAGGAATTCCTCCTAATCAGCAAAGAC 13198533 Query 178048 TTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAA 178107 | ||||| | || ||||| || ||||||||| | ||| | | || || ||| | |||| Sbjct 13198532 TGATCTTTACTGGTAAACAACTGGAAGATGGATGTACTTTGTCTGACTACAACATTCAAA 13198473 Query 178108 AAGAATC 178114 | || || Sbjct 13198472 AGGAGTC 13198466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203581089829202