Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq7002 147 2e-30 seq7446 125 7e-24 seq758 109 5e-19 seq2225 84.2 2e-11 >seq7002 Length=12659153 Score = 147 bits (162), Expect = 2e-30 Identities = 172/231 (74%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || |||||||| ||||| ||| ||| ||||| ||||| ||||| || Sbjct 9467040 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 9467099 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||| |||||||| |||||||| ||||| ||||| | || Sbjct 9467100 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 9467159 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| |||| |||| || || ||||| || | ||| || Sbjct 9467160 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCATGGTGTCACTGGGCTCGAC 9467218 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | || || ||||| ||||| || ||||| || || ||||||||||| Sbjct 9467219 CTTGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 9467269 >seq7446 Length=17224310 Score = 125 bits (138), Expect = 7e-24 Identities = 169/232 (73%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || |||||||| ||||| ||| ||| | | ||||| ||||| || Sbjct 13346886 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTT---GGATGTTGTAGTCTGA 13346942 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||| |||| ||| |||||||| ||||| ||||| | || Sbjct 13346943 GAGAGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGG 13347002 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCA 41813 | | ||||||||| ||| |||| |||| ||| || | |||| || | ||| | Sbjct 13347003 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGA 13347061 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || || ||||| |||| || ||||| || || ||||||||||| Sbjct 13347062 CCTCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTT 13347113 >seq758 Length=2790677 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| ||||| ||||| ||||| || || ||||| | || || ||||||||||| || || Sbjct 2565179 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 2565120 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || | ||| ||||| | ||||| || ||||| ||| |||||| ||||| Sbjct 2565119 GATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATT 2565060 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | ||||| || | ||||||||| | || || || || || ||||| ||||| || Sbjct 2565059 TTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 2565000 Query 41851 GAAAATCTGCATGTT 41865 ||| |||||||| || Sbjct 2564999 GAAGATCTGCATTTT 2564985 Score = 98.7 bits (108), Expect = 9e-16 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||||| ||||| || || ||||| | || || Sbjct 2565652 ACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 2565593 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || || | ||| ||||| | ||| | || || || ||| | Sbjct 2565592 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCCTGG 2565533 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | ||||| || | ||||| ||||| || || || || Sbjct 2565532 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCA-CTCCAGGGTGATGGTCTTG 2565474 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || || ||||| |||||||| Sbjct 2565473 CCGGTCAGGGTTTTCACGAAGATCTGCAT 2565445 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/208 (70%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 41655 CCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGA 41714 |||| ||||| || ||| ||||| ||||| ||||| || || ||||| | || || | Sbjct 2565422 CCAGGTGCAGGGTCGACTC-TTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCA 2565364 Query 41715 GCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||| || || || || | ||| ||||| | ||||| || ||||| ||| | Sbjct 2565363 GCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGAATGCCTTCCTTATCCTGG 2565304 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 ||||| ||||| | ||||| || | | | |||| | || || || || Sbjct 2565303 ATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCAC--CCTCAAGGGTGATGGTCTTG 2565246 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCA 41861 || ||||| ||||| ||||| ||||||| Sbjct 2565245 CCGGTCAG-GTCTTCACGAAGATCTGCA 2565219 >seq2225 Length=31540782 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/211 (71%), Gaps = 10/211 (5%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||||| || || || || ||||| | || || Sbjct 23425169 ACCAGGTGCAG-GTCGACTCCTTCTGGATGTTGTA-TCAGAAAGAGTGCGGCCATCTTCC 23425112 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || || | ||| ||||| | |||| || ||| ||| | Sbjct 23425111 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA---TGCTTCTTATCCTGG 23425055 Query 41774 ATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT-TT 41831 || || ||||| | || | ||||| || | |||||| |||| || || || | Sbjct 23425054 ATCTTGGCCTTCACATTTCG--ATGGTGTCACT-GGCTCCACTTCCAGGGTGATGGTGCT 23424998 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || ||||| ||||| ||||| |||||||| Sbjct 23424997 TGCCGGTCAGGGTCTTCACGAAGATCTGCAT 23424967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462247754939600