Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mandrillus_20leucophaeus_20[refseq_20GCF_5F000951045.1_202015-03-12] 12,821 sequences; 3,061,992,840 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq8034 255 5e-63 seq9112 214 2e-50 seq11434 156 4e-33 seq9712 116 3e-21 seq4492 114 1e-20 seq6514 93.3 4e-14 >seq8034 Length=1360500 Score = 255 bits (282), Expect = 5e-63 Identities = 437/629 (69%), Gaps = 15/629 (2%) Strand=Plus/Plus Query 11591 TCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAA 11650 |||| |||||| |||| | ||||| ||||| | || ||||||||||| |||||| Sbjct 970907 TCCTCTGATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAA 970966 Query 11651 CCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttt 11710 || || ||||| || || |||||| | |||||||| | || ||||||| ||||||||| Sbjct 970967 CCCTCATCTCTGCTGATAAGTTCACTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTC 971026 Query 11711 tttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAAT 11770 || | ||| ||||| | ||||| ||||| |||||||| || || ||||| || ||||| Sbjct 971027 TTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAG 971086 Query 11771 GCTACTACTCTTTCTCCATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCA 11827 ||||| || | ||| ||||| || ||| ||| ||||| ||||||||| Sbjct 971087 GCTACGACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCT 971146 Query 11828 GCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTA 11885 || ||||| || || || ||| ||||| || || || | | |||| | ||||| Sbjct 971147 GCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTC--CCTTTCTT 971204 Query 11886 TATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCA 11945 | |||| ||| || || || || | | |||||||||||| ||||| || ||||||| Sbjct 971205 TGGGATCTTTTAGGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCA 971264 Query 11946 TAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATC 12005 | || ||||| || ||||||||||| || || |||| | ||| || || ||||| Sbjct 971265 TGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 971324 Query 12006 TTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTT 12065 ||| | || || |||||||| || ||||| || | |||||| || || || | ||| Sbjct 971325 GCTCCACCAAGTTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGGA 971384 Query 12066 TTATAAAGTATTTTTC----GTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGAT 12121 |||||| ||| | || | ||| || | ||||| | | | || || || Sbjct 971385 ATATAAAATATCTCTCCTCGGGCTTCAGGGA----TTCCCAGTGCTGAATGTCCTTGGAC 971440 Query 12122 AAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATA 12181 | || || || || ||||||| || ||| | | | |||||||| | ||||||| Sbjct 971441 AGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCCAGATA 971500 Query 12182 TCATGATACTTAATAGGGAAAATAACGAA 12210 || || |||| || ||||| || || || Sbjct 971501 TCGTGGTACTCGATGGGGAAGATGACAAA 971529 >seq9112 Length=1254116 Score = 214 bits (236), Expect = 2e-50 Identities = 503/753 (67%), Gaps = 25/753 (3%) Strand=Plus/Minus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | ||| | | ||| |||||| | ||||| || | |||| || | || | Sbjct 511572 ATTCTCTGTTGGATTCGACACCACTCCCATCCTCTGATACTCCTTTACTC-TCTTCTCAA 511514 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || || ||||| | ||||| |||| |||||||||| ||| || || | ||| Sbjct 511513 AGAAGTTCGTCTTTC-----AGTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTC 511459 Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 |||| || || | |||| | || | | ||| ||||| || | || || || | Sbjct 511458 TGAAAACCTTGCTAAAACCCAGTTCCGGCATG--TCTGTCTGCCACAGACTCAATGTATT 511401 Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546 | ||||| | |||||||| || || || | ||| || | || | || | || | Sbjct 511400 GCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAATT 511341 Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606 ||| |||||| ||| |||| || ||| | |||| |||| |||| | Sbjct 511340 CCTGTTCTATCCGAACAGCATTGATAATTCTTTCTCTTATTCTCTCCTCCAGTGGTTTGT 511281 Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666 || | || || ||||| | || |||||| |||| |||||||| || |||| ||| | Sbjct 511280 GTGCCAGGTGATTGAACATCAGGCAAGCAAAACCACAGTGTAAACCCTCATCTCCACTAA 511221 Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726 | |||||||| ||||| || | || ||||||| ||||||||| || | ||| ||||| | Sbjct 511220 TAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCG 511161 Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTC 11786 ||||| ||||||||||| || || ||| | | ||||| |||| || | ||| | Sbjct 511160 ATGCAAAATAACCAGAAAAG---ATGCCTTCCGCTGTAGCAAAGACTACAACACGTTCCC 511104 Query 11787 CATA------TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTA 11840 |||| | | |||| | | ||||| | ||||||||| || ||||| || | Sbjct 511103 CATAGGTAGCTGCTTTGTCCCCA---ATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGA 511047 Query 11841 CGCATTCCATTGTTTCTATAGCGTTAAA--TAAATGCATTTTTTCTATATTATCTCTTAC 11898 | || ||| ||||| || || || || |||| | ||||| | |||| ||| Sbjct 511046 CACAAGGCATCGTTTCAATGGCATTGAAGCGAAATTC--CCTTTCTTTGGGATCTTTTAT 510989 Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 || || || || | |||||||||||| | ||||| || |||||||| || ||||| || Sbjct 510988 GTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAA 510929 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 ||| ||||||| || || |||| ||| || || | ||| ||| | || || Sbjct 510928 GCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTTGGCTACATCGCTCCACCAAGTT 510869 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAA 12051 ||||||| || |||||||| | | |||| || Sbjct 510868 TGCATTTACTATGCCATCACTTGCTACAAAGAA 510836 >seq11434 Length=1819511 Score = 156 bits (172), Expect = 4e-33 Identities = 317/463 (68%), Gaps = 16/463 (3%) Strand=Plus/Plus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| | ||| |||||||| || || || || || |||||||| |||||||| | Sbjct 311822 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 311881 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||||| |||| |||| | | ||| ||||| ||||| |||||||||||||| Sbjct 311882 CCAGGCATCAGTCCTTGTTTCCTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 311941 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT--ATA----CCTTGTTGCTA 11803 | | ||||| ||||| ||| | || | |||||||| || | ||||| | | Sbjct 311942 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACATCTTTGTTCCCA 312001 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 ||||| | ||||| | || ||||| || || || ||||||| | || || Sbjct 312002 ---ATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTCCAATGGCA 312057 Query 11864 TT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 || | | |||| | ||||| | |||||| ||| || ||| || || | | ||||| Sbjct 312058 TTGAAGAGAAATTC--CCTTTCTTTGTTATCT-TTA-ATGTGTGTCAATAAGGAGACTAT 312113 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 || || ||||| || ||||| |||| ||||| || |||||||| || | |||| Sbjct 312114 TTATGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG 312173 Query 11982 AACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041 | ||| | || | |||| |||| | || || |||| ||| || ||||||| | Sbjct 312174 TAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATG 312233 Query 12042 ATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 |||||| || || || |||| |||||| ||| |||| || Sbjct 312234 CTGCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTC 312276 >seq9712 Length=6868699 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| |||||||| | || ||||||| ||||||||| || Sbjct 3777327 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3777386 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| || || ||||| || ||||| ||| Sbjct 3777387 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 3777446 Query 11774 ACTACTCTTTCTCC 11787 || || | ||| || Sbjct 3777447 ACAACACGTTCACC 3777460 >seq4492 Length=3487830 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 1722499 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 1722558 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 1722559 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1722618 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 1722619 CCACCACTCTTTCCCC 1722634 >seq6514 Length=2016651 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || ||||||||| Sbjct 1876206 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 1876147 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || |||||||| || || || || | Sbjct 1876146 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 1876087 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 1876086 CTGTTTCTTATACCAT 1876071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468449713044240