Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mandrillus_20leucophaeus_20[refseq_20GCF_5F000951045.1_202015-03-12] 12,821 sequences; 3,061,992,840 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq8034 241 1e-58 seq9112 215 5e-51 seq11434 138 1e-27 seq9712 111 2e-19 >seq8034 Length=1360500 Score = 241 bits (266), Expect = 1e-58 Identities = 396/567 (70%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 || ||||| || || | || ||||||||||| || | ||||||||||| || |||||| Sbjct 970928 AGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTGATAAGT 970987 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 || | |||||||| | || ||||||| ||||||||| || | ||| ||||| | || Sbjct 970988 TCACTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 971047 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821 || || ||||||||||| || || || ||||||||||| |||| | ||||| ||| | Sbjct 971048 AAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACGACACGTTCACCATAG 971107 Query 13822 GATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 13881 | || | ||||| ||||| ||||| || | || || || | | || | Sbjct 971108 GTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGC 971167 Query 13882 ATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCA 13941 || ||||| || |||||||| | | |||| | ||||| | | | | ||| || ||| Sbjct 971168 ATCGTTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGGATCTTTTAGGTAAGTGTCA 971227 Query 13942 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA 14001 ||||| | |||||||||||||| ||||||||||| || || || || || ||||| ||| Sbjct 971228 ATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAA 971287 Query 14002 CATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACA 14061 || | ||||||| || || || | ||||| || ||||||||||||| || Sbjct 971288 CAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACT 971347 Query 14062 ATACCATCACTAGCTGCAAAAAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCAT 14119 || ||||| || |||||||| || ||| || ||| | ||||| ||| ||| || Sbjct 971348 ATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGGAAT--ATAAAATATCTCTCCTCGG 971405 Query 14120 TGTTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCA 14177 || || || ||| | ||| || ||||| || || || || || || | ||||| Sbjct 971406 GCTTCAGGGATTCCCAGT--GCTGAATGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCA 971463 Query 14178 AAAACTAGCGACAGCTTTTTTATACAT 14204 || ||| | || || |||||||| Sbjct 971464 GAAGGAAGCCTCCGCCTTCTTATACAT 971490 >seq9112 Length=1254116 Score = 215 bits (238), Expect = 5e-51 Identities = 517/775 (67%), Gaps = 14/775 (2%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | || || | || ||||| | Sbjct 511598 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGATTCGACACCACTCCCATCCT 511540 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| ||||| || ||| |||||| ||||| || Sbjct 511539 CTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAATATTCTC 511485 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||||| || ||||| || | | || || || | |||| ||||| | Sbjct 511484 CATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGCATG-- 511427 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||| || || | | ||||||| ||||| ||||| | |||||||| || || || || Sbjct 511426 TCTGTCTGCCACAGACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 511367 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA- 13609 ||||| | | ||| | ||||| | |||||| ||||| | | | || | Sbjct 511366 CACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTTC 511307 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13669 ||||| | | || | || | | || || || || || | || |||||| Sbjct 511306 TCTTATTC-TCTCCTCCAGTGGTTTGTGTGCCAGGTGATTGAACATCAGGCAAGCAAAAC 511248 Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729 |||| || | |||||||||| |||||||||||| || ||||| || | || ||||||| Sbjct 511247 CACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCA 511188 Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789 ||||||||| || | ||| ||||| | || || | || ||||||| | || || Sbjct 511187 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCCG 511131 Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849 ||| |||||| ||| | ||||| ||| | | ||| ||||| ||||| | Sbjct 511130 CTGTAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTGCA 511071 Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909 ||||| || | || || || | | || ||| ||||| || |||||||| | || Sbjct 511070 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 511011 Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 || | ||||| | | | ||||| || |||||||| || ||||||||| |||| |||| Sbjct 511010 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTA 510951 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCG 14029 ||||||| || || || || || ||| | ||||| | ||||||| | || || || Sbjct 510950 TGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTT 510891 Query 14030 AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 | | ||| || |||||||| |||| || || |||||||| ||| |||| || Sbjct 510890 GGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGCTACAAAGAA 510836 >seq11434 Length=1819511 Score = 138 bits (152), Expect = 1e-27 Identities = 292/431 (68%), Gaps = 5/431 (1%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| | ||| || | |||||||| || ||||||||||| || |||||||| | Sbjct 311822 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 311881 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||||| |||| |||| | | ||| ||||| || || || || |||||||| Sbjct 311882 CCAGGCATCAGTCCTTGTTTCCTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 311941 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 | | || ||| ||||| ||| | ||||||||| | | | |||||| Sbjct 311942 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACATCTTTGTTCCCA 312001 Query 13840 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||| | || |||| | | || || || | | | ||||||| | || ||||| Sbjct 312002 ATCCA-ACACAAGACCCAAACTGCCTTCTTCTTGA-CACAGGCATTGTTCCAATGGCATT 312059 Query 13899 GAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958 ||| | | |||| | ||||| || | |||| ||| |||||||| | |||| || Sbjct 312060 GAAGAGAAATTCCCTTTCTTTGTTATCTTTAATG--TGTGTCAATAAGGAGACTATTTAT 312117 Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14018 ||||| |||||||||||| |||| || || || ||||| || || | ||||| Sbjct 312118 GTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAAT 312177 Query 14019 TTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGC 14078 || | || |||| ||| |||||||||||| || || ||||||| ||||| Sbjct 312178 CTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGC 312237 Query 14079 AAAAAATGCCA 14089 ||| || |||| Sbjct 312238 AAAGAAAGCCA 312248 >seq9712 Length=6868699 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| || |||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 3777325 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3777384 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| || || || ||||||||||| | Sbjct 3777385 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 3777444 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | ||||| || Sbjct 3777445 CTACAACACGTTCACC 3777460 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 3775171 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 3775229 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 3775230 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 3775289 Query 13431 CATAAAATCGAATGGATT 13448 |||||| || ||||| || Sbjct 3775290 CATAAAGTCAAATGGGTT 3775307 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 3788509 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 3788568 Query 13990 AAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | ||||||| Sbjct 3788569 AAGCCATAGAAACAGCGGGCTTCTG 3788593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478512100162440