Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mandrillus_20leucophaeus_20[refseq_20GCF_5F000951045.1_202015-03-12] 12,821 sequences; 3,061,992,840 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq1936 116 3e-21 seq6158 113 4e-20 seq5392 105 6e-18 >seq1936 Length=760985 Score = 116 bits (128), Expect = 3e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | ||||||||||| ||||||||| |||| ||||||||| Sbjct 748038 GGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 747979 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || || || || || |||| || |||||||| ||||| || ||||| ||||| || || Sbjct 747978 CCCCAAGCTGAGAACCACGACCCAGACATCAAGGAGCATGTGAACTCCCTGGGGGAGAAT 747919 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || | || | ||||| ||||| Sbjct 747918 CTGAAGACCCTCAGGCTGAGGCTGCGGCGCTG 747887 Score = 82.4 bits (90), Expect = 7e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 129104 AGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACAT 129163 |||||| ||||| |||||||| ||||| ||||| |||||||||||||||||| | ||||| Sbjct 745642 AGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACATAGAAGCCTACAT 745583 Query 129164 GAC 129166 ||| Sbjct 745582 GAC 745580 >seq6158 Length=9241946 Score = 113 bits (124), Expect = 4e-20 Identities = 196/285 (69%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTG 5298 |||||| ||||| || ||| || | |||||||| ||||| | ||| ||| Sbjct 4167034 TCCGGTGGAACCAAAACCACCTGAACCCCTTTCGGTGTCATCCAAAGCTTGAACAACTTC 4167093 Query 5299 AACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAAC 5358 | | |||| | | || |||||||| || ||||| || || | || ||||| || || Sbjct 4167094 TATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 4167153 Query 5359 CTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTC 5418 ||||| | || || || |||||||| || || || ||||| |||| || ||||| Sbjct 4167154 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 4167213 Query 5419 GTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGC 5478 | || || ||||| || || || ||||||||||| | || | ||| || |||| || Sbjct 4167214 ATTTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACTGTGGAGC 4167273 Query 5479 TATGCGTCCGTAGCAACCAGGTGGGAGCTTTATCAGAAGGTCAGT 5523 || | ||| || || |||| |||||| |||| ||| ||| || Sbjct 4167274 TACTCTTCCATAACACCCAGAAGGGAGCGCTATCTGAATGTCCGT 4167318 >seq5392 Length=2524750 Score = 105 bits (116), Expect = 6e-18 Identities = 176/253 (70%), Gaps = 1/253 (0%) Strand=Plus/Minus Query 5272 GGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATTAG 5331 |||||| ||||| | ||| |||| | | | || | | || |||||||| || || Sbjct 2267096 GGTGTCATCCAAAGCTTGAACTTCTTCTATTTCCGGATAAAAAATTCGTTCGCAAATGAG 2267037 Query 5332 CTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGCAC 5391 ||| || || | || | ||| || || ||||| | || || ||||||||||| || Sbjct 2267036 CTGTGCAATTCGATCACACTTTTTGACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTAC 2266977 Query 5392 CACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTG 5451 || || ||||| |||| || ||||| || || || ||||| || || || |||||||| Sbjct 2266976 AACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAGTG 2266917 Query 5452 -TTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTTTA 5510 |||| || | ||| || |||| |||| | ||| || || |||| |||||| || Sbjct 2266916 TTTTGCAAGCCAAGCCTGACTGTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGCTA 2266857 Query 5511 TCAGAAGGTCAGT 5523 || ||| ||| || Sbjct 2266856 TCTGAATGTCCGT 2266844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447678642401520