Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mandrillus_20leucophaeus_20[refseq_20GCF_5F000951045.1_202015-03-12] 12,821 sequences; 3,061,992,840 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq3503 104 2e-17 seq3359 98.7 7e-16 seq4303 91.5 1e-13 seq3381 91.5 1e-13 seq3214 84.2 2e-11 >seq3503 Length=2845972 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| ||||| | |||||| ||||| || ||||| || ||||| || Sbjct 460294 CCACCACGAAGTCTCAAAACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 460353 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 460354 AAAGTCCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 460413 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 460414 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 460473 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 || | ||| ||||| || || || || ||||| || ||||| ||||| |||| Sbjct 460474 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTTG 460525 >seq3359 Length=286138 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||||||||||| | || || | || ||||| || ||||| || |||||||| || Sbjct 33453 TGCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 33394 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 |||| | | | ||||| | |||||||| || |||||| |||||| ||||| || Sbjct 33393 AGAGAGTGCAGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTG 33334 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || |||||||| ||||||| ||| || | || || || || || | Sbjct 33333 GGATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTTGC 33274 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 | || | | | |||||||| || | || || || ||||| || ||||| |||| Sbjct 33273 CCTCAAGGTTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTTTG 33220 >seq4303 Length=4886142 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| | ||||| || Sbjct 2814806 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGACTATTGTAGTCAGAC 2814747 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 2814746 AAAGTCCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 2814687 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 2814686 ATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 2814627 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 2814626 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 2814577 >seq3381 Length=5156926 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/227 (69%), Gaps = 11/227 (5%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 4775676 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTC---- 4775731 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | ||||| ||||| |||||||| | |||| | || || || ||| Sbjct 4775732 AGA-------CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 4775784 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||| | || | ||| || Sbjct 4775785 ATTCCTTCCTTATCCTGGATATTGGCCTTTACATTTTCTGTTGTGTTCAAGGGTTCAACC 4775844 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || ||||| || ||||| || ||||| ||||| Sbjct 4775845 TCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 4775891 >seq3214 Length=3208335 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14951 CACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGA 15010 |||| || | ||| || || |||||||| ||||| |||||||| || ||||| || | Sbjct 1956906 CACCACGGAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGACA 1956847 Query 15011 GAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAA 15070 | | | | ||||| | ||| |||||||| | ||| | ||| | | |||| Sbjct 1956846 AAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCCGACCAGGAGGAA 1956787 Query 15071 TTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGT 15130 |||||||||| | || ||| |||||| ||| ||| ||||| ||| || | Sbjct 1956786 TTCCTTCCTTAACCTGGATCTTGGCCTTTACATTTTATATCGTATCCGAGGGTTCAACCT 1956727 Query 15131 CTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | | ||| ||||| || ||||| || ||| | || ||||| ||||| || Sbjct 1956726 CGAGGGTGATGGTCTTCCCTGTAAGGGTTATCACGAAAATCTGCATTTT 1956678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357336155377985