Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mandrillus_20leucophaeus_20[refseq_20GCF_5F000951045.1_202015-03-12] 12,821 sequences; 3,061,992,840 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3359 107 1e-18 seq9489 89.7 3e-13 seq5702 87.8 1e-12 seq3414 86.0 4e-12 seq11879 84.2 1e-11 seq5491 82.4 5e-11 >seq3359 Length=286138 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || ||||||| || || ||| |||||| || |||||||| || ||| Sbjct 33451 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 33392 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||| | || |||| ||||| |||||||| |||| ||||||||| || | || Sbjct 33391 AGAGTGCAGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 33332 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| ||| | | | ||| |||||| || | | | Sbjct 33331 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CGTTCTCAATGGTGTCACTGGGCTTGCC 33273 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||| ||||| || | | || || |||||||||||||| Sbjct 33272 CTCAAGGTTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCAT 33225 >seq9489 Length=9372684 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || | ||||| || || ||| |||||| || ||||| || || ||| Sbjct 432516 CCACCTCACAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTCTAGTCTGAG 432575 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||| | || ||| ||||| || ||||| |||| || |||||| || || | Sbjct 432576 AGACTGCGGCCATCCTCCGGCTGTTTGCCCGCAAATATCAGACACTGCTGGTCAGGCAGG 432635 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || | ||||| |||| | | || |||| ||| |||||| || | ||||| Sbjct 432636 ATGCCCTACTTGTCTTGGATTT-CGGCTTTGACATTCTCAGTGGTGTCCCTGGGCTCCAC 432694 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || | | || || |||||||||||||| Sbjct 432695 CTCAAGGGTGATGGTCTTGCCCATGAGGGTGTTCACAAAGATCTGCAT 432742 >seq5702 Length=3466958 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || | | ||||| | ||| ||| |||||| || |||||||| | ||| Sbjct 1722239 CCACCTCGCAGGCACAGCACCAGGTTTAGGGTGGACTCTTTCTGGATGTTGTAGCCTGAG 1722298 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| || |||| |||| | ||||||| || | || Sbjct 1722299 AGAGTGCGGCCATCCTCCAGCTGTTTCCCAGCAAGTATCAGATGCTGCTGGTCAGGTGGG 1722358 Query 33643 ACACCT-TCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||| || ||||| |||||| ||| | ||| | | |||||| || | || | Sbjct 1722359 ATACCCCTCCTTGTCTTGAATTTTGGCTTTGA-CATTCTAAATGGTGTCACTGGGCTCAA 1722417 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 1722418 TCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 1722466 >seq3414 Length=2822291 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | |||| || || || ||| || || |||||||| || ||| Sbjct 171351 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 171410 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 171411 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 171470 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || || || |||| ||| || | |||||| || | ||||| Sbjct 171471 ATGCCTTCTTTATCTTGGATCTTGGCCTTCA-CATTTTCGATGGTGTCACTGGGCTCCAC 171529 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || || || | || || ||||||||||||||| Sbjct 171530 CTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATA 171578 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| || | |||| || || || |||||| || |||||||| || || Sbjct 171806 ACCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 171865 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 171866 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 171925 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||||| ||| |||| || | |||||| || | |||| Sbjct 171926 AATGCCTTCCTTATCCTGGATTTTGGCCTTC-ACATTTTCGATGGTGTCACTGGGCTCCA 171984 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | || || || ||||||||||| Sbjct 171985 CCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 172033 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | |||| || || || ||| || || |||||||| || || Sbjct 171578 ACCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 171637 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 171638 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 171697 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || || || ||| |||| || | |||||| || | |||| Sbjct 171698 GATGCCTTCTTTATCCTGGATCTTGGCCTTC-ACATTTTCGATGGTGTCACTGGGCTCCA 171756 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 171757 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 171806 >seq11879 Length=1036973 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || | | ||||| || || ||| ||||| |||| ||| || ||| Sbjct 345947 CCACCTCGCAGGTGCAGCACCAGGTGCAGGGTGGACTCTTCCCAGATGTCGTAGTCTGAG 346006 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| ||||| ||||||| |||| | ||||||| || | || Sbjct 346007 AGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGGG 346066 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| ||| | ||| ||| |||||| || | | || Sbjct 346067 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CATCCTCATTGGTGTCACTGGGCTTGAC 346125 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 346126 CTCAAGAGTGATGGTCTTGCCCGTAAGTGTCTTCACAAAGATCTGCAT 346173 >seq5491 Length=6255621 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| |||||| || |||||||| || || || ||||| | || |||| || Sbjct 1751717 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 1751776 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||||||||| |||| | |||||| || | || | ||||| || || || || Sbjct 1751777 TTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTT- 1751835 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || | |||| || | ||||||||| | || || || | ||||| || || || || Sbjct 1751836 TGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGT 1751895 Query 33726 TAACGTTTTTACAAAGATCTGCATAGT 33752 | || || || ||||||||||| || Sbjct 1751896 CAGGGTCTTCACGAAGATCTGCATTGT 1751922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328652638048320