Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3640 322 5e-83 seq1230 102 8e-17 >seq3640 Length=31815103 Score = 322 bits (356), Expect = 5e-83 Identities = 598/869 (69%), Gaps = 8/869 (1%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || |||||||| || || |||| || | || || || |||||||| || || || || Sbjct 24467998 ACTCCCATTCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGT 24468057 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCA 16781 | ||||||||||| || ||||| ||||| || ||||| | || | | |||| Sbjct 24468058 GCAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAACACCTTGCTAA--AACCCA 24468115 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 |||| || | ||| || || |||||||| || || || |||||| ||| |||| Sbjct 24468116 GTTCCAGCATAAGTCTGTCAGCCACAAATTCAATGTACTGCTTCATTAACATGCAATTCA 24468175 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 | || || || || || | || || || | || | || ||| ||| || | Sbjct 24468176 TCCCAATGAGCTTCACAGGCAAGGCGTCAGTGAGGAACTCCTCCTGTATCCTAACAGCAT 24468235 Query 16902 CCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCA 16961 |||| || |||| | ||| |||||| ||||| || ||||| ||||||| Sbjct 24468236 TGATAATTATTTCTTTTACTCTCTGCTCCGACGGTTTATGTACCAGGTGTTTGAACATCA 24468295 Query 16962 GACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCA 17021 | || || || || || ||||| ||||| |||||||| |||||||| || |||||||| | Sbjct 24468296 GGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGA 24468355 Query 17022 ACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGA 17081 || |||||| |||||||||||| | ||| ||||| | || || || |||||||||| Sbjct 24468356 GGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGA 24468415 Query 17082 ATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTAC 17141 | || || || || | ||||| || | | ||||| | || || || ||||||| | Sbjct 24468416 AGATGCCTTCCACTGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCC 24468475 Query 17142 GAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCT 17201 |||| | | |||| || || || | ||| | ||| |||||||| ||||| | Sbjct 24468476 CAATCTAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTAAATGGCAT 24468535 Query 17202 TAAATA-AT-TTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTA 17259 | || | || ||| |||| | || | || | || || ||||| ||||| || || || Sbjct 24468536 TGAAGAGATATTCCCTTTCT-TTGGA-ATCTTTAATGTAAGTATCAATGAGGAGACTATA 24468593 Query 17260 CATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGC 17319 |||||| || || ||||| |||||||| || || || || || || || || || || | Sbjct 24468594 CATTTCAGAATGCATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCCTCTGT 24468653 Query 17320 TATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 || |||||||| | ||||| ||| | | ||||| || || ||||| || || || Sbjct 24468654 AATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTAGC 24468713 Query 17380 GGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCA 17439 || || || |||| | |||| ||||||||||| || || || | ||| | ||| Sbjct 24468714 TGCAAAGAAAGCCAGAACATGCGATATGAAATATTTCTCATCAGGCTTCAGAGCTTCCCA 24468773 Query 17440 GTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTT 17499 || || | || ||||| | |||||| || | || |||||||| |||| | || || Sbjct 24468774 GTGCTGAATGTCCTTGGAAAGATCCACCTCCTTGGCCGTCCAAAAGGAAGCCTCAGCTTT 24468833 Query 17500 TTTATACATATTCCAAATATCATTGTATT 17528 |||||||| | ||||||||||| ||||| Sbjct 24468834 CTTATACATTTGCCAAATATCATGGTATT 24468862 >seq1230 Length=159902609 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| || |||||||| | ||||||||| ||||||||||| Sbjct 150440333 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 150440392 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || || || || | ||||| | Sbjct 150440393 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 150440452 Query 17106 C 17106 | Sbjct 150440453 C 150440453 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| || |||||| | ||||||||| ||||||||||| Sbjct 150431939 CCTCATCTCTGCTAATAAGTTCATTG--AAATGTGGAGCCGGGCATCAGTCCTCGTTTCT 150431996 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || || || || | ||||| | Sbjct 150431997 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 150432056 Query 17106 C 17106 | Sbjct 150432057 C 150432057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517495928561040