Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3640 345 4e-90 seq1231 111 2e-19 seq1230 93.3 4e-14 >seq3640 Length=31815103 Score = 345 bits (382), Expect = 4e-90 Identities = 605/877 (69%), Gaps = 4/877 (0%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || |||||||| || || || | || | || || ||||||||||| ||||| || | Sbjct 24467998 ACTCCCATTCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGT 24468057 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGT 16021 | ||||| |||||||| ||||| ||||| || || | ||| | |||||| Sbjct 24468058 GCAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAACACCTTGCTAAAACCCAGT 24468117 Query 16022 TCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATT 16081 ||| | | ||| || || |||||||| || || || |||||| |||||| || Sbjct 24468118 TCCAGCATAAGTCTGTCAGCCACAAATTCAATGTACTGCTTCATTAACATGCAATTCATC 24468177 Query 16082 CCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCT 16141 || || || || || | || | || | || | | | |||| ||| || | Sbjct 24468178 CCAATGAGCTTCACAGGCAAGGCGTCAGTGAGGAACTCCTCCTGTATCCTAACAGCATTG 24468237 Query 16142 TTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGA 16201 |||| || || | ||| || |||||| |||| |||||||| ||||| || Sbjct 24468238 ATAATTATTTCTTTTACTCTCTGCTCCGACGGTTTATGTACCAGGTGTTTGAACATCAGG 24468297 Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || || ||||| || |||| || || |||||||| |||||||| |||||||| || | Sbjct 24468298 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 24468357 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 || ||||| |||||||||||| | ||||||||| | ||||| || || |||||||| Sbjct 24468358 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAG 24468417 Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381 || || || || | ||||| || | | ||||| | || ||||| ||||| | | | Sbjct 24468418 ATGCCTTCCACTGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCA 24468477 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441 ||| | | |||| || || || | || | |||| |||||||| ||||| || Sbjct 24468478 ATCTAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTAAATGGCATTG 24468537 Query 16442 AACA-AT-TTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499 || | || ||| |||| | || ||| | || || |||||||| || | ||| |||| Sbjct 24468538 AAGAGATATTCCCTTTCTTTGGA--ATCTTTAATGTAAGTATCAATGAGGAGACTATACA 24468595 Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 |||| || || ||||| || ||||| || || || |||||||| || |||||||| | | Sbjct 24468596 TTTCAGAATGCATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCCTCTGTAA 24468655 Query 16560 TTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAG 16619 | || ||||| | |||||| ||| ||| ||| ||||| || || || ||||| || | Sbjct 24468656 TCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTAGCTG 24468715 Query 16620 CAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAAT 16679 |||| || |||| | ||| ||||||||||| || |||| | ||| | ||| | Sbjct 24468716 CAAAGAAAGCCAGAACATGCGATATGAAATATTTCTCATCAGGCTTCAGAGCTTCCCAGT 24468775 Query 16680 CTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTT 16739 | | || ||||| | |||||| || | | |||||||||| |||| | || || | Sbjct 24468776 GCTGAATGTCCTTGGAAAGATCCACCTCCTTGGCCGTCCAAAAGGAAGCCTCAGCTTTCT 24468835 Query 16740 TATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 ||||||||| ||||||||||| ||||| || ||||| Sbjct 24468836 TATACATTTGCCAAATATCATGGTATTCGATAGGAAA 24468872 >seq1231 Length=116334831 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | || ||||| |||| |||| Sbjct 53055243 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 53055302 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || ||||| ||||| || || || |||| ||||| | Sbjct 53055303 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 53055362 Query 16344 CGATTAATCGTTCC 16357 | | || || |||| Sbjct 53055363 CCACTACTCTTTCC 53055376 >seq1230 Length=159902609 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| |||||||| || | || ||||| |||||||||||| Sbjct 150440335 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 150440394 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| || || |||||||| || || || || | ||||| || Sbjct 150440395 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 150440453 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| ||| ||| || | || ||||| |||||||||||| Sbjct 150431941 TCATCTCTGCTAATAAGTTCATTG--AAATGTGGAGCCGGGCATCAGTCCTCGTTTCTTG 150431998 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| || || |||||||| || || || || | ||||| || Sbjct 150431999 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 150432057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511365317002960