Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1230 266 3e-66 seq233 102 7e-17 seq3188 87.8 1e-12 >seq1230 Length=159902609 Score = 266 bits (294), Expect = 3e-66 Identities = 517/761 (68%), Gaps = 2/761 (0%) Strand=Plus/Plus Query 18586 TGCAAGCTCGATACAATTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTT 18645 |||| || || |||| || || ||||||||||||| | || || || | ||| || | Sbjct 40601866 TGCAGGCGCGCTACAGCCTGAGAGATGAATTTCCTCTGCTGACAACCAAACATGTGTTCT 40601925 Query 18646 GGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAAC 18705 ||| || || |||| |||||| | ||||||||| || || || | | ||||||| Sbjct 40601926 GGAAGGGTGTTTTGGAGGAGTTGCTGTGGTTTATCAAGGGATCCACAAACGCTAAAGAAC 40601985 Query 18706 TCGCCGCTAAAGATATACACATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGA 18765 | | | || | | | || |||||| | ||||| | | ||||| || | Sbjct 40601986 TGTCTTCGAAGGGAGTGAAGATCTGGGATGCCAATGGATCCCGAGACTTTCTGGATGGCC 40602045 Query 18766 ATGGCTTCCATAAAAGACACACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGAC 18825 || ||| || ||| |||||| | ||||| |||| |||||||||||||| | Sbjct 40602046 TGGGATTCTCTACCAGAGGAGAAGGGGACTTGGGCCCAGTTTATGGCTTCCAGTGGAGGC 40602105 Query 18826 ATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGC 18885 ||||||| || ||||| ||||| | ||| | |||| | |||||| | || || | Sbjct 40602106 ATTTTGGGGCCGAATACAAAGATATGGATTCAGATTATTCAGGTCAAGGAGTTGACCAAC 40602165 Query 18886 TGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGT 18945 |||||| || || ||||| || ||||| |||| || | || |||| || || | Sbjct 40602166 TGCAAAAAGTGATCGATACCATCAAAACCCACCCTGACGACAGAAGAATCATCATGTGTG 40602225 Query 18946 CTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGT 19005 ||||||||||||| ||| |||| | |||| || || || |||||| | || |||| Sbjct 40602226 CTTGGAATCCAAAAGATCTCCCTCTGATGGCGCTGCCCCCGTGTCACGTCCTCTGCCAGT 40602285 Query 19006 TTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCC 19065 | ||||| | |||| || | |||||||| | |||||| | ||||| || ||||||| Sbjct 40602286 TCTACGTGGTGGACGGCGAGCTGTCCTGCCAGCTGTACCAGCGGTCGGGAGACATGGGCC 40602345 Query 19066 TTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTA 19125 | || | || |||||||| || | || || || || || ||||| | ||||| | | Sbjct 40602346 TGGGCATGCCATTCAACATCGCCAGCTACGCCCTGCTCACGTACATGATCGCGCACATCA 40602405 Query 19126 CAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATC 19185 | | || || | || || || ||||||| |||| |||||||| |||||| |||||| Sbjct 40602406 CCCGGCTCAAGCCAGGTGACTTTGTTCATACTTTGGGAGATGCACACATTTACCTGAATC 40602465 Query 19186 ATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAA 19245 | || || | | || | ||||| ||| |||| |||||| || || |||| Sbjct 40602466 ACATCGAGCCGCTGAAGATTCAGCTTCAGCGAGAACCAAGACCTTTCCCGAAGCTCAAAA 40602525 Query 19246 TTATTCGAAATGTAACAGA-TATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGA 19304 | ||||||| || ||| || | || || ||| || || ||| || ||| || Sbjct 40602526 TCCTTCGAAAAGT-TGAGACAATTGATGATTTAAAAGCTGAAGACTTTAAGACTGAAGGT 40602584 Query 19305 TATAATCCACAccccccccTAAAAATGGAAATGGCTCTTTA 19345 |||||||| || || | | ||||||||||||||| |||| Sbjct 40602585 TATAATCCGCATCCAACTATTAAAATGGAAATGGCTGTTTA 40602625 >seq233 Length=141296404 Score = 102 bits (112), Expect = 7e-17 Identities = 277/420 (66%), Gaps = 8/420 (2%) Strand=Plus/Minus Query 18928 GACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCAT 18987 || |||| || || | || |||||||||| | | | || | ||| || |||| | Sbjct 68913744 GAAGAATCATCATGTGTGCTGGGAATCCAAAAGTTCTTCCTCTGATGTCGCTGCCTCTGT 68913685 Query 18988 GTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGA 19047 | || | | || ||||| || || | || | ||| | |||||| | |||||| Sbjct 68913684 GCCATGCCCTCTGCCAGTTCTATGTGGTGAATGATGAGCTGTCCTGCTGTTTGTACCAGT 68913625 Query 19048 GATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCT 19107 | || || || || ||| |||| | | ||||||||| || | ||||| || ||||| | Sbjct 68913624 GGTCAGGAGACATAGGCTTTGGCATGCAGTTCAACATCGCCAGCTATGCCCTGCTTACAT 68913565 Query 19108 ACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATG 19167 |||| |||| || |||| || || || || | || || | |||| |||| ||| Sbjct 68913564 ACATGATAGCACACATTACTGGTCTAAAGCCCAGTGACTTTGTA-ATACTTTGGGAAATG 68913506 Query 19168 CACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCT--AGCTCGATCCCCAAA 19225 ||||||||||| | ||||| || | | |||| | ||||| ||| || | || Sbjct 68913505 CACATATTTACCTAAATCACATTGGGCCACTAAAGATTCAGCTTCAGCAAGAATC--AAG 68913448 Query 19226 ACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGATATAAACGACTTTAAATGGGA 19285 |||||| || || ||||| ||| ||| || || | || || || ||| || Sbjct 68913447 ACCTTTCCCAAAGCTCAAAATCATTTAAAAAGTT---GAGACAATTGATTTCAAAGCCGA 68913391 Query 19286 CGATTTTCAGCTTGATGGATATAATCCACAccccccccTAAAAATGGAAATGGCTCTTTA 19345 | ||| | || | || ||||||||| | || | | ||||||||||||||| |||| Sbjct 68913390 GAACTTTAATATTAAAGGTTATAATCCATATCCAACTATTAAAATGGAAATGGCTGTTTA 68913331 >seq3188 Length=83067054 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| |||| | |||| || || || |||||| | | || ||||| ||||| | || Sbjct 66355309 GATCTCCCTCTGATGGCGCTGCCCCCGTGTCACGCCCTCTGCCAGTTCTACGTGGTGGAC 66355368 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 || || | |||||||| | |||||| | ||||| || |||||||| || || |||||| Sbjct 66355369 GGCGAGCTGTCCTGCCAGCTGTACCAGCGGTCGGGAGACATGGGCCTGGGCGTGCCGTTC 66355428 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCA 19120 ||||| || | || || || || || ||||| | ||||| Sbjct 66355429 AACATCGCCAGCTACGCCCTGCTCACGTACATGATCGCGCA 66355469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399466616163510