Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq2497 284 1e-71 seq702 266 4e-66 seq946 114 2e-20 >seq2497 Length=93316391 Score = 284 bits (314), Expect = 1e-71 Identities = 265/337 (79%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| || ||||| ||||| | | | | ||| | || | |||||||||||||| Sbjct 4557742 AGCAGGGCTTCAATGTCTGGCTCGATGTCGATGGTTGGAAAGTGACGGCTGTACCTGCGC 4557801 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||||| |||||||| ||||||||| || ||||| || | |||||||||| Sbjct 4557802 ACGGGCACACCGTCAGGACCCACCAGGAACTTCTCAAAATTCCACGCAATGTCGTTGCGG 4557861 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| ||||||||| |||| || ||||||| ||| ||||| | ||||||||| Sbjct 4557862 CACACCGGAGACCAGATGATGAACTTGGGGTCGGTCATGAGCGCAGTGGCGTCGTCGCTG 4557921 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| |||||||| || || |||||||| |||||||| || ||| | ||||| || ||| Sbjct 4557922 GGCGCTGGCAGGGCTTCCCGAAGGAAGGCAAAGAGCGGGTGCGCCTTCGCACCATTCACC 4557981 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||||||||| | || || |||||||| ||| || || ||||||| ||| Sbjct 4557982 TCGCACTTCTCGAAGAGAGTGAAATTGGGCTCGAACCCGCCACCGGGTCGGACGTACTTG 4558041 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 |||||| || |||||| | |||| |||||| |||| Sbjct 4558042 AGGGAATTCAGGATCTCTTCGTTCTTGGCGTTCTCCT 4558078 Score = 219 bits (242), Expect = 5e-52 Identities = 216/276 (78%), Gaps = 5/276 (2%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 4558329 CCTGATGCCCAAACTGGTTGCACGGGAAGCCCAGCACGACCAGGCCCCGGGGCCCGAGGC 4558388 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||| | Sbjct 4558389 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTGGTCCCTCAGAGGGACGCCA 4558448 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| |||||| | | |||| | |||||| || || || || | Sbjct 4558449 CATTCTCGATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACGGGCTCCCCGCCAG 4558508 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCG 83630 | |||||| || |||||||||||||| || |||| ||||| || ||| | || | Sbjct 4558509 CCAGCGGGCGCGCCGAGAAGGCGTACACCGACTGGGTC---GCCGCCGCTAGCCGAGCAG 4558565 Query 83631 CGTACTTGGCACAGAGC-TCGGAAAAGCGCGGGAAG 83665 | || |||| ||||| || || | || |||||| Sbjct 4558566 CACACATGGC-GAGAGCGTCCGAGAGGCAAGGGAAG 4558600 >seq702 Length=116768492 Score = 266 bits (294), Expect = 4e-66 Identities = 369/518 (71%), Gaps = 29/518 (6%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| || ||||| ||||| | | ||| ||| | || | |||||||||||||| Sbjct 88365600 AGCAGGGCTTCAATGTCTGGCTCGATGTCCACGGTGGGAAAGTGACGGCTGTACCTGCGC 88365541 Query 83117 ACGGGCGTGC--CGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGC 83174 |||||| || |||||| ||||||| || |||||||| Sbjct 88365540 ACGGGCACGCACCGTCAGGACCCACCGGGAT---------------------GTCGTTGC 88365502 Query 83175 GGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGC 83234 || | | ||||||||| | | | |||||| || ||||| ||||||||| Sbjct 88365501 AGCGCGCCGGAGACCAGATGACGGACGTGGGGTCAGTCCTGAGCGCAGGGGTGTCGTCGC 88365442 Query 83235 TAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGA 83294 | ||||| |||||||| || || |||||||| |||||||| || ||| | ||||| | | Sbjct 88365441 TGGGCGCTGGCAGGGCTTCCCGCAGGAAGGCAAAGAGCGGGTGCGCCTTCGCACCATCCA 88365382 Query 83295 CCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCC----AGGACGGACG 83350 || ||||||||||| |||| | || |||||||| ||| || || |||||| Sbjct 88365381 CCCCGCACTTCTCGGAGAGAGGGACATTGGGCTCGAACCCGCCACCGGGTGGGTCGGACG 88365322 Query 83351 TGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTA 83410 | ||| |||||| || |||||| || ||| |||||| ||||| | || |||||||| Sbjct 88365321 TACTTGAGGGAATTCAGGATCTCTGCGTTCCTGGCGTTCTCCTGACGCCCAAACTGGTTG 88365262 Query 83411 CACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATC 83470 || ||||| || |||| ||||| ||||| || || ||||||||||||||||||| || | Sbjct 88365261 CAAGGGAAGCCCAGCAGGACCAGGCCCCGGGC-CCGAGGCGCCGCTGCAGCTCGTCCACC 88365203 Query 83471 TGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACC 83530 || ||||| |||| ||||||| | || ||||||||||| || ||| || ||||| ||| Sbjct 88365202 TGGGTGTAGTCCCAGACCGTGGTCCCCCAGAGGGACGCCACCTTCCCGGGGAGCAGCACC 88365143 Query 83531 CGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCC 83568 | ||| | | |||| | |||||| || || || || Sbjct 88365142 TTG-CCCACAGGGAGCCCAGGCTCACGGGCTCCCCGCC 88365106 >seq946 Length=123392446 Score = 114 bits (126), Expect = 2e-20 Identities = 202/287 (70%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || || | | ||| || ||| ||| ||||||||| || ||| Sbjct 72396150 GCAGCTGCGCAGCATCTATGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCCCGCCTGC 72396208 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 72396209 TGGTGCACCTCTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 72396268 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 72396269 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGACCCGCATCAAGCTCATCCGCCACTAC 72396327 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| |||| ||| ||||| ||||| |||| ||||| ||| Sbjct 72396328 GTGCAGCTGCTTTACCCCCGGGCCAAAAACGACCGCGTCTGGACTCTGGAGTTCGTGGGC 72396387 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||||| ||||| | |||||| || |||||| Sbjct 72396388 AAGCTGGACGAGCGCTGCCGTCGCCG--GGACACGGAGCAGAGGCGC 72396432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608738370727120