Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2763 125 6e-24 seq3972 109 5e-19 seq520 107 2e-18 seq3640 105 6e-18 seq1230 104 2e-17 seq4347 98.7 8e-16 seq3641 93.3 4e-14 seq1582 93.3 4e-14 seq3398 91.5 1e-13 >seq2763 Length=65901067 Score = 125 bits (138), Expect = 6e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || || ||||| ||||| | || || || | || Sbjct 60922689 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 60922630 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| || | |||||||| || Sbjct 60922629 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCC 60922570 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| ||||||| |||| ||| |||||| Sbjct 60922569 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTC 60922510 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||||||| | || || ||||| ||||||||||||| Sbjct 60922509 TTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTTGA 60922473 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || |||| |||| || ||||| || || ||||| ||||| | Sbjct 60922932 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 60922873 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || |||||||| ||||| ||| | || || ||||||||||| || Sbjct 60922872 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 60922813 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| ||||| | ||| ||||||| ||||||| Sbjct 60922812 ATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCACC 60922753 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| | || || ||||| || ||||| Sbjct 60922752 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 60922706 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| || ||||| || || ||||| ||||| | || || || | || Sbjct 60923146 GAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 60923087 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| ||||| ||| | || || ||||||||||| || | |||||||| || Sbjct 60923086 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATC 60923027 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||||| | | | ||||||| ||||||| |||| ||| ||||| Sbjct 60923026 CTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAAGGTGATGGT 60922967 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||||| | || ||||| || || ||||| Sbjct 60922966 CTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 60922934 >seq3972 Length=29216678 Score = 109 bits (120), Expect = 5e-19 Identities = 161/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | |||||||| |||| |||||||| || || ||||| || |||| Sbjct 8003197 CCGCCTCGCAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGAA 8003256 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || ||| | ||||||||||||||||||||| | | || | ||||||||| || Sbjct 8003257 AGAGTGTGGCCATCCTCCAGCTGTTTGCCCGCAAATGTCAGGCGCTGCTGGTCAGGTGGG 8003316 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || ||| || | ||| || || | |||||| Sbjct 8003317 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCGCTGGGCTCGACC 8003376 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||| | || || || || || |||| || ||||| Sbjct 8003377 TCAAGGGCGATGGTC-TCCCCGTCAAGGTCTTCGCAAAGATCTGCAT 8003422 >seq520 Length=73916538 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||| || || ||||| ||||| | ||||| | | || Sbjct 72484112 AGGACCAAGTGCATGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCT 72484171 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || || |||||| | || ||| | |||||||||||| Sbjct 72484172 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCGGATCAGGGGGAATGCCTTCCTTGTCT 72484231 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | | ||||||| |||||| || | ||| |||||| Sbjct 72484232 TGGATCTTTGCCTTGACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGTGATGGTC 72484291 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || || ||||| || ||||| Sbjct 72484292 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 72484323 Score = 104 bits (114), Expect = 2e-17 Identities = 110/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | |||||||| |||| ||||||||||| || ||||| ||||| | | Sbjct 72484325 CCACCTCTCAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 72484384 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||| || || ||| | || || |||||||| | || ||| Sbjct 72484385 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGAT-CAGGGGG 72484443 Query 21069 ACGCCTTCCTTGTCGGCGATCTTT 21092 | |||||||||||| ||||||| Sbjct 72484444 ATGCCTTCCTTGTCTTGGATCTTT 72484467 >seq3640 Length=31815103 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||| || || ||||| ||||| | ||||| | | || Sbjct 21636567 AGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCT 21636508 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || || |||||||| || || | |||||||||||| Sbjct 21636507 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCT 21636448 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | | || || | ||||||| || | ||| |||||| Sbjct 21636447 TGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTC 21636388 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||||||| | || || ||||| || |||||| Sbjct 21636387 TTGCCGGTCAGGGTCTTCACAAAGATCTGCATT 21636355 >seq1230 Length=159902609 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||||| |||| |||| ||| || || ||||| || |||| Sbjct 130889236 CCACCTCGCAGACGAAGCACCAGGTGCAGGGTGGCCTCTTTCTGGATGTTGTAATCCGAA 130889177 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||||||||||||| | || || ||||||||| || Sbjct 130889176 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGATGCTGCTGGTCAGGTGGG 130889117 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || ||| || | || || |||| ||||| Sbjct 130889116 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTTGATGGTGTCACTGGGCTTGACC 130889057 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| || || | || || ||||| || ||||| Sbjct 130889056 TCAAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAGATCTGCAT 130889010 >seq4347 Length=47401472 Score = 98.7 bits (108), Expect = 8e-16 Identities = 109/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | |||||||| |||| ||||||||||| || ||||||||||| | | Sbjct 19988745 CCACCTCTCAGACAGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGAC 19988804 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || | |||||| | || ||| | || || |||||||| | | ||| Sbjct 19988805 AGGGTGTGCCCATCTTTCAGCTGCTCCCCAGCAAAGATCAGCCTCTGCTGAT-CGGGGGG 19988863 Query 21069 ACGCCTTCCTTGTCGGCGATCTTT 21092 | |||||||||||| ||||||| Sbjct 19988864 ATGCCTTCCTTGTCTTGGATCTTT 19988887 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||| || || ||||| ||||| | ||||| | || Sbjct 19988532 AGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCATCCATCT 19988591 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 | |||||| || | ||| | || || |||||||| || ||| | ||||||||||| Sbjct 19988592 TACAGCTGCTTCCTAGCAAAGATCAGCCTCTGCTGATCAGGGGGTATACCTTCCTTGTCT 19988651 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||||| || || | | | || |||| |||||| | | ||| |||||| Sbjct 19988652 TCGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTTGAGGGTGATGGTC 19988711 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 19988712 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 19988743 >seq3641 Length=30143674 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| |||| |||||||| || || ||||| || |||| Sbjct 24919902 CCACCTCTCAGACGAAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGAA 24919843 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | |||||||||||||||||| || | || || | ||||||||| || Sbjct 24919842 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCCCAAATATCAGACGCTGCTGGTCAGGTGGG 24919783 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || ||| || | | | || |||| |||||| Sbjct 24919782 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACAT-TCTCATGGTGTCACTGGGCTCGACC 24919724 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||| || || | || || ||||| || ||||| Sbjct 24919723 TCAAGGGTGATGGTC---CCCGTCAGGGTCTTCACAAAGATCTGCAT 24919680 >seq1582 Length=98468360 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||| |||| | ||||||| |||| ||||||||||| |||||||| || | | Sbjct 98016068 CCACCTTGCAGACGAAGCACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAATTGGAA 98016009 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||||||||||||| | || || | |||||||| || | | Sbjct 98016008 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGT-CAAGTGG 98015950 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 ||| ||||| || ||| || ||| || | ||| || |||| ||| | Sbjct 98015949 GTGCCCTCCTTATCTTGGATTTTGACTTTGACATTCTCGATGGTGTCACTGGG-TGGACC 98015891 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | | || ||||| || ||||| Sbjct 98015890 TCAAGGGTGATGGTCTTGCCCGTCAGGGACTTCACAAA-ATCTGCAT 98015845 >seq3398 Length=72247402 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| ||||| | | Sbjct 1977507 CCCCTC--AGGCGGAGGACCAGGTGCAGGGTCGACTCGTTCTGGATGTTGTAGTCAGAAA 1977450 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| ||| | || || ||||||||||| || Sbjct 1977449 GAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGG 1977390 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 |||||||| | |||||| ||||| | | || |||| ||||||| | Sbjct 1977389 TCCCTTCCTTACCCTGGATCTTGGCCTTCACATTCTCAGTGGTGTCACTGGGCTCCACCT 1977330 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAA 21166 ||| ||| |||||||||||||| | || ||||| || Sbjct 1977329 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAA 1977293 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTT-TGAATGTTATAGTCCGC 21007 || |||||||| ||||||| ||| | || ||||| |||||||| || || | Sbjct 17330153 CCGCCTCGCAGATGAAGCACCAGGTGCGGGGGGGGACCCTTTCTGAATGTTGTAATCAGA 17330094 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || || | ||||||||||||||||||||| |||| || | |||| |||| || Sbjct 17330093 AAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCA-AAATCAGACGCTGCGGGTCAGGTGG 17330035 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCAC---CTGGCCGACAGTATCACCGGGCTC 21124 | ||| |||||||| ||| || ||| || ||||| | || || | |||||| Sbjct 17330034 GATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTGGCTG---GTGTCTCTGGGCTC 17329978 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | || | ||| |||||||| | ||| | || || ||||| || ||||| Sbjct 17329977 AGCCTCAAGGGTGATGGTCTTCCTGGTCAGGGTCTTCACAAAGATCTGCAT 17329927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422219686831448