Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3640 127 2e-24 seq520 127 2e-24 seq1230 122 8e-23 seq3641 116 3e-21 seq3398 107 2e-18 seq1582 107 2e-18 seq3972 105 6e-18 seq2763 102 7e-17 seq1 91.5 1e-13 seq233 84.2 2e-11 >seq3640 Length=31815103 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| | || | || |||||||| | || |||||||| || |||||||| || Sbjct 21636583 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 21636524 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| ||| || ||||| || || || |||| || | ||||||||| ||||| Sbjct 21636523 GAGGGTGCGTCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGATCAGGAGG 21636464 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||||| ||||||||| || ||| || || | || | |||||| || ||| || Sbjct 21636463 GATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCAC 21636404 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||| | || ||||||||||| || || ||||| |||||||| Sbjct 21636403 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 21636356 >seq520 Length=73916538 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| | || | || |||||||| || || |||||||| || |||||||| || Sbjct 72484096 ACCTCCCCTCAAGCGCAGGACCAAGTGCATGGTGGACTCTTTCTGGATGTTGTAGTCAGA 72484155 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | |||||| ||| || ||||| || ||||| |||| || | |||| |||| || || Sbjct 72484156 GAGGGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCGGATCAGGGGG 72484215 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||||| ||||||||| || ||| || || | || | ||| || || ||| || Sbjct 72484216 AATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCACTGGGCTCAAC 72484275 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||| | || ||||||||||| || || ||||| |||||||| Sbjct 72484276 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 72484323 >seq1230 Length=159902609 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || | |||||| || ||||||||||| | |||||| |||||| Sbjct 130889219 CACCAGGTGCAGGGTGGCCTCTTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTC 130889160 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | || ||| ||||||| || || || ||||||||||||||| Sbjct 130889159 CAGCTGTTTGCCCGCAAATATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 130889100 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | | || |||||| || || |||||| | ||| | || || Sbjct 130889099 GATTTTGGCTTTGACATTCTTGATGGTGTCACTGGGCTTGACCTCAAGGGTGATGGTCTT 130889040 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| |||||||| Sbjct 130889039 CCCCGTCAGGGTCTTCACAAAGATCTGCAT 130889010 >seq3641 Length=30143674 Score = 116 bits (128), Expect = 3e-21 Identities = 153/210 (73%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||||||| || ||||||||||| | |||||| |||||| Sbjct 24919885 CACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTC 24919826 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || | | || ||||||||||| || || || ||||||||||||||| Sbjct 24919825 CAGCTGTTTGCCCCCAAATATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 24919766 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | || | |||||| || ||||||||| | ||| | | | Sbjct 24919765 GATTTTGGCTTTGACATTCTC-ATGGTGTCACTGGGCTCGACCTCAAGGGTGA---TGGT 24919710 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| |||||||| Sbjct 24919709 CCCCGTCAGGGTCTTCACAAAGATCTGCAT 24919680 >seq3398 Length=72247402 Score = 107 bits (118), Expect = 2e-18 Identities = 141/194 (73%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604 ||| |||| |||||||||||||| | |||||| |||||| |||||||| || || Sbjct 17330119 GACCCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCA 17330060 Query 118605 TAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACC 118664 | || ||||||||| | || || || ||||||||||||||| ||||| ||| || Sbjct 17330059 AA-ATCAGACGCTGCGGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACA 17330001 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 | | | |||||| || ||| |||| | ||| | || || | |||||| || || Sbjct 17330000 TTCTGGCTGGTGTCTCTGGGCTCAGCCTCAAGGGTGATGGTCTTCCTGGTCAGGGTCTTC 17329941 Query 118725 ACAAAAATCTGCAT 118738 ||||| |||||||| Sbjct 17329940 ACAAAGATCTGCAT 17329927 >seq1582 Length=98468360 Score = 107 bits (118), Expect = 2e-18 Identities = 152/210 (72%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || ||||||||||||| | | |||||| |||||| Sbjct 98016051 CACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAATTGGAAAGAGTGCGGCCATCCTC 98015992 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | || ||||||||||| || | || |||||||||| ||| Sbjct 98015991 CAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAAGTGG-GTGCCCTCCTTATCTTG 98015933 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | |||| |||||| || | |||||| | ||| | || || Sbjct 98015932 GATTTTGACTTTGACATTCTCGATGGTGTCACTG-GGTGGACCTCAAGGGTGATGGTCTT 98015874 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| | || || ||||||||||| Sbjct 98015873 GCCCGTCAGGGACTTCAC-AAAATCTGCAT 98015845 >seq3972 Length=29216678 Score = 105 bits (116), Expect = 6e-18 Identities = 150/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||||||| || ||||||||||| | |||| | |||||| Sbjct 8003214 CACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGAAAGAGTGTGGCCATCCTC 8003273 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | | || |||||||| || || || ||||||||||||||| Sbjct 8003274 CAGCTGTTTGCCCGCAAATGTCAGGCGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 8003333 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | |||| |||||| || ||||||||| | || | | | | Sbjct 8003334 GATTTTGGCTTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTC-AAGGGCGATGGTCT 8003392 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || |||| |||||||| Sbjct 8003393 CCCCGTCAAGGTCTTCGCAAAGATCTGCAT 8003422 >seq2763 Length=65901067 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || |||||||| || | |||||| ||| || Sbjct 60922686 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 60922627 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || ||||| || || ||||| || Sbjct 60922626 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGG 60922567 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 60922566 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTG 60922507 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || ||||| || ||||| Sbjct 60922506 CCGGTCAGGGTCTTCACAAAGATTTGCAT 60922478 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || |||||||| || | |||||| ||| || Sbjct 60922914 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 60922855 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || ||||| || || ||||| || Sbjct 60922854 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGG 60922795 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || || ||| ||||| | ||| | || ||| Sbjct 60922794 ATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 60922735 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || ||||| |||||||| Sbjct 60922734 CCGGTCAGGGTCTTCACAAAGATCTGCAT 60922706 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || |||||||| || | |||||| ||| || Sbjct 60923142 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 60923083 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || ||||| || || ||||| || Sbjct 60923082 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGG 60923023 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||| || || ||| ||||| | ||| | || ||| Sbjct 60923022 ATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAAGGTGATGGTCTTG 60922963 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || ||||||||||| Sbjct 60922962 CCGGTCAGGGTCTTGACGAAAATCTGCAT 60922934 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | || ||||| |||||||||||||| || Sbjct 824228 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 824287 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || || || || ||||| | || || | |||||||| ||||| Sbjct 824288 CAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 824347 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | || |||| | || || Sbjct 824348 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 824407 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | | || || || || | |||||||| ||||||||||| Sbjct 824408 CTCGAGAGGGATAGTCTTTCCTGTACGGGTTTTTACGAAAATCTGCAT 824455 >seq1 Length=114275543 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | || ||||| |||||||||||||| || Sbjct 8597721 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 8597662 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || || || || ||||| | || || | |||||||| ||||| Sbjct 8597661 CAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 8597602 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | || |||| | || || Sbjct 8597601 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 8597542 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | ||||| || || || |||||||| ||||||||||| Sbjct 8597541 TTCAAGAGTGATAGTTTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 8597494 >seq233 Length=141296404 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | | ||||||||| | || | || |||| ||||||||| | || || Sbjct 108315111 TACCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTGCTTTTGAATGGTATAGTCAG 108315052 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||| || ||| || || || || ||||| | || || | |||||||| |||| Sbjct 108315051 ACAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCTGGAG 108314992 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| || || || || || | ||| | || |||| | |||| Sbjct 108314991 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGA 108314932 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || | || || || || || |||||||| ||||||||||| Sbjct 108314931 CCTCGAGAGTGATAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 108314883 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | | ||||||||| | || | || ||||| || ||||||||||| || Sbjct 109921660 TACCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAG 109921719 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||| || ||| || || || || ||||| | || || | |||||||| |||| Sbjct 109921720 ACAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAG 109921779 Query 118630 GTATGCCCTCCTTGT-CTG---TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTC 118685 | || || || || | ||| | || || || || | ||| | || |||| | Sbjct 109921780 GAATTCCTTCTTTATCCTGGCCTTATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGT 109921839 Query 118686 TCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| | || | || || || || || |||||||| ||||||||||| Sbjct 109921840 TCGACCTCCAGAGTGATAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 109921892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433789804049176