Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq946 102 2e-16 >seq946 Length=123392446 Score = 102 bits (112), Expect = 2e-16 Identities = 109/139 (78%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||| ||||| ||| | ||||||||||||||||| ||||||||| | || ||||| Sbjct 38536168 GCATTTTTCGGAGCCCAGATGAATTCTTTTATCCATGTGATTATGTACTCATACTATGGG 38536227 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| |||| ||||||||| |||||||| || || || || | Sbjct 38536228 TTAACTGCATTTGG-CCCATGGATTCA-AAAGTATCTTTGGTGGAAGCGATACCTGACCA 38536285 Query 52175 TAATGCAGTTGGTACAGTT 52193 | ||||| ||||| |||| Sbjct 38536286 TGTTGCAGCTGGTA-AGTT 38536303 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| | | || ||||| | || || ||||| || || ||||| || || ||| Sbjct 38534944 TGGTGGTACTTTGTGTCTAAAGGAGTGGAGTATTTGGACACTGTGTTTTTTATCCTGAGG 38535003 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| ||| || ||| ||| || || ||||||||||| | |||||||||||| | Sbjct 38535004 AAGAAAAATAACCAAGTTTCTTTCCTTCATGTATATCATCACTGTACTATGTTTACGTTG 38535063 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | ||||| || ||||| ||| |||| || || || Sbjct 38535064 TGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACA 38535098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923108196187120