Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq233 104 3e-17 seq2763 102 1e-16 seq1 102 1e-16 >seq233 Length=141296404 Score = 104 bits (114), Expect = 3e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATT-CTTTAGATATATTATAATC 146106 || ||||| | |||||| || || | ||| | ||| || | |||| || || |||| || Sbjct 108315112 GTACCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTGCTTTTGA-ATGGTATAGTC 108315054 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 || | ||| | | ||| |||| ||| || ||||||||||||| |||||||||||| || Sbjct 108315053 AGACAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCTGG 108314994 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 |||||||||||| ||||| || Sbjct 108314993 AGGAATTCCTTCCTTATCCTG 108314973 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || ||||| | |||||| || || | ||| | ||| || || || || || || || Sbjct 109921659 GTACCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCA 109921718 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || | ||| | | ||| |||| ||| || ||||||||||||| |||||||||||| ||| Sbjct 109921719 GACAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGA 109921778 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||||||||||||||| || Sbjct 109921779 GGAATTCCTTCTTTATCCTG 109921798 >seq2763 Length=65901067 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| || || ||| || || || || || || Sbjct 824229 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 824287 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| |||| ||| || ||||||||||||| |||||||||||| ||||| Sbjct 824288 CAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 824347 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 824348 AATTCCTTCCTTATCCTG 824365 >seq1 Length=114275543 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| || || ||| || || || || || || Sbjct 8597720 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 8597662 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| |||| ||| || ||||||||||||| |||||||||||| ||||| Sbjct 8597661 CAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 8597602 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 8597601 AATTCCTTCCTTATCCTG 8597584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743455040053760