Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2763 120 2e-22 seq520 98.7 6e-16 seq3640 96.9 2e-15 seq1230 91.5 1e-13 seq3972 84.2 1e-11 seq3641 82.4 5e-11 >seq2763 Length=65901067 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | || |||||||| ||||||||||| || Sbjct 60922932 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 60922873 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || |||| |||||||||||| || ||||||| ||||||||| | ||| Sbjct 60922872 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 60922813 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||| ||| | || | || | ||| | | || || Sbjct 60922812 ATCCCT-TCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCAC 60922754 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| |||||||| || || ||||||||||||||||| Sbjct 60922753 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 60922706 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | || |||||||| ||||||||||| || Sbjct 60922704 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 60922645 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || |||| ||||||||| || || ||||||| ||||||||| | ||| Sbjct 60922644 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 60922585 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||| ||| | || | || | || | | || || Sbjct 60922584 ATCCCT-TCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCAC 60922526 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| |||||||| || || ||||||||||| ||||| Sbjct 60922525 CTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCAT 60922478 Score = 102 bits (112), Expect = 5e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| ||||||||||| || || ||| | || Sbjct 60923145 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 60923086 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 |||| |||||||||||| || ||||||| ||||||||| | ||| | || ||||| || Sbjct 60923085 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCT-TCCTTATC 60923027 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | ||| | | || || |||| |||||||| Sbjct 60923026 CTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAAGGTGATGGT 60922967 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || || || || |||||||| Sbjct 60922966 CTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 60922934 >seq520 Length=73916538 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| || || || | || |||| |||||| || || || Sbjct 72484133 TCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAG 72484192 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| |||| | || ||| | || |||||||| |||||| ||| | || Sbjct 72484193 ATCAGCCTCTGCGGATCAGGGGGAATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTC 72484252 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || || | |||||||| |||||||| || || |||||| Sbjct 72484253 TCAATGGTATCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACA 72484312 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 72484313 AAGATCTGCATC 72484324 >seq3640 Length=31815103 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| || || || | || |||| |||||| || || || Sbjct 21636546 TCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTGCTTCCCGGCAAAG 21636487 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| |||||| || || | || |||||||| |||||| ||| | || Sbjct 21636486 ATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTC 21636427 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || || | |||||||| |||||||| || || |||||| Sbjct 21636426 TCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACA 21636367 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 21636366 AAGATCTGCAT 21636356 >seq1230 Length=159902609 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||||||| | || |||||||| |||||||| || || Sbjct 130889236 CCACCTCGCAGACGAAGCACCAGGTGCAGGGTGGCCTCTTTCTGGATGTTGTAATCCGAA 130889177 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||| ||||| || || || || |||||||||| || Sbjct 130889176 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGATGCTGCTGGTCAGGTGGG 130889117 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| || ||| ||||| | || || | || | | | ||| Sbjct 130889116 ATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACATTCTTGATGGTGTCACTGGGCTTGAC 130889058 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | |||||||| || || || || || |||||||||||||||||| || Sbjct 130889057 CTCAAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAGATCTGCATCTCT 130889006 >seq3972 Length=29216678 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | ||||||||||| | || |||||||| |||||||| || || Sbjct 8003197 CCGCCTCGCAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGAA 8003256 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||| ||||| || || | || ||||||||||| || Sbjct 8003257 AGAGTGTGGCCATCCTCCAGCTGTTTGCCCGCAAATGTCAGGCGCTGCTGGTCAGGTGGG 8003316 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| || ||| ||||| | || | || | ||| | | ||||| Sbjct 8003317 ATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACATTCTCGATGGTGTCGCTGGGCTCGAC 8003375 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | | ||||| | | || || | || ||| |||||||||||||| || Sbjct 8003376 CTCAAGGGCGATGG-TCTCCCCGTCAAGGTCTTCGCAAAGATCTGCATCTCT 8003426 >seq3641 Length=30143674 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 24919887 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCC 24919828 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| ||||| | || || || ||||||||||| || | || ||||||||| Sbjct 24919827 TCCAGCTGTTTGCCCCCAAATATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 24919768 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | || | || | || | | ||||| || | ||||||| Sbjct 24919767 TGGAT-TTTGGCTTTGACATTCTC-ATGGTGTCACTGGGCTCGACCTCAAGGGTGATGG- 24919711 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 | || || || || |||||||||||||||||| || Sbjct 24919710 --TCCCCGTCAGGGTCTTCACAAAGATCTGCATCTCT 24919676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323041768335680