Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3640 351 9e-92 seq1231 98.7 9e-16 seq1230 98.7 9e-16 >seq3640 Length=31815103 Score = 351 bits (388), Expect = 9e-92 Identities = 628/908 (69%), Gaps = 22/908 (2%) Strand=Plus/Plus Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972 ||| ||| || | ||||||| ||| |||| | |||||||| | |||||||| ||||| Sbjct 24467976 ATTCTCTATTGGACTTGACATCACTCCCATTCTCTGATATTCGCCTACTCTCTTCTCAAA 24468035 Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA 16032 ||| || || |||||||| | || |||||| |||||||| ||||| ||||||| | || Sbjct 24468036 GAAGTTAGTCTTTCCTTCCAGTGCAATATTCTCCATAAAGTCAAATGGATTTTCT--ACT 24468093 Query 16033 ATAGTATTTATCGC---ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATA 16089 | | | | || | |||| ||||| || | ||| || ||||||||||| || || Sbjct 24468094 CT-GAACACCTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCAGCCACAAATTCAATGTA 24468152 Query 16090 CTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 ||| |||||||| || ||||| || || | || ||||| | || || || | || Sbjct 24468153 CTGCTTCATTAACATGCAATTCATCCCAATGAGCTTCACAGGCAAGGCGTCAGTGAGGAA 24468212 Query 16150 AtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGG 16209 | | | ||| |||| || | || ||||| ||| ||||| | || | | || | Sbjct 24468213 CTCCTCCTGTATCCTAACAGCATTGATAATTATTTCTTTTACT-CTCTGCT---CCGACG 24468268 Query 16210 GTTTAATAA----GTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCC 16265 ||||| | |||||| ||||| | || ||||| ||||| || || || || || | Sbjct 24468269 GTTTATGTACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTC 24468328 Query 16266 TACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAA 16325 | || || | || || |||||||| || || ||||| ||||||||||| || | ||| | Sbjct 24468329 TGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGA 24468388 Query 16326 ATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATC 16385 |||| | ||||| |||||||||||||| || ||||| ||||| ||||| || || | | Sbjct 24468389 ATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACAC 24468448 Query 16386 GCTCACCGTACGT--TCTAtttttactttctatccattttttagcccaatttgctttttg 16443 | || || || || || ||| | | | ||| | ||||||| ||| || | Sbjct 24468449 GTTCTCCATAGGTAGCCTCTTTGTCC--CCAATCTAACGCAAGGCCCAATCTGCCTTCTT 24468506 Query 16444 tttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAA 16503 || ||||| ||| | | || ||||| || | ||| | |||||||| |||| Sbjct 24468507 CTTGACACAAGGCATCGTTTAAATGGCATTGAAGAGATATTCCCTTTCTTTGGAATCTTT 24468566 Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 ||| |||||||| || || | |||||||||||| ||||| || || ||||| || || || Sbjct 24468567 AATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGCATGTTTTCCATGGCAATTTG 24468626 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAA 16623 || ||||| || || | ||| || | || || ||||| | ||| | || | || Sbjct 24468627 GAAGCCATAGAAACAGCGAGCCTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAA 24468686 Query 16624 GTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtt 16683 |||||| || ||||| ||||| ||||||||||| || || || | || || |||| Sbjct 24468687 GTTTTCATTTACTATGCCATCACTAGCTGCAAAGAAAGCCAGAACATGCGATATGAAATA 24468746 Query 16684 tttttCGTTA--TCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCT 16741 ||| || | | | | || || ||||| || || || || | ||| ||||| Sbjct 24468747 TTTCTCATCAGGCTTCAGAGCTT--CCCAGTGCTGAATGTCCTTGGAAAGATCCACCTCC 24468804 Query 16742 TCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACA 16801 | | |||||||| ||||| |||| || |||||||||| ||| || || | ||| | Sbjct 24468805 TTGGCCGTCCAAAAGGAAGCCTCAGCTTTCTTATACATTTGCCAAATATCATGGTATTCG 24468864 Query 16802 ATAGGAAA 16809 |||||||| Sbjct 24468865 ATAGGAAA 24468872 >seq1231 Length=116334831 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || |||||||| | | | || |||||||| | Sbjct 53047830 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCCGTGGTTTCTGCCATAACTGCAAAAC 53047889 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 || || || ||||| || |||||||||||||||||||||| ||| ||||| |||| Sbjct 53047890 GCTGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTGTAAAGAAATGTTTT 53047949 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 53047950 CCATAAAATCAAAGGGATTTTCTG 53047973 >seq1230 Length=159902609 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 150440335 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 150440394 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||| ||||| || Sbjct 150440395 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 150440454 Query 16379 AC 16380 || Sbjct 150440455 AC 150440456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| ||||||||||| || | ||| ||||| | ||||| |||||||||||||| Sbjct 150431975 CCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAG 150432034 Query 16355 ATACCTTCAACTGCGGCAAATGCAAC 16380 || ||||| ||||| ||||| || || Sbjct 150432035 ATGCCTTCCACTGCAGCAAAGGCTAC 150432060 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 16488 tttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| ||| ||| |||||||| || || | |||||||||||| ||||| || | Sbjct 150438683 TTTCTTTGGAGTCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGT 150438742 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 | ||||| || || || || ||||| || || | |||||| | || || ||||| Sbjct 150438743 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTC 150438797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462467610410800