Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq234 1647 0.0 seq4546 104 2e-17 seq1582 95.1 8e-15 >seq234 Length=119751181 Score = 1647 bits (1826), Expect = 0.0 Identities = 1343/1631 (82%), Gaps = 34/1631 (2%) Strand=Plus/Minus Query 107143 TAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCACTCT 107202 |||||| | ||| |||||||||||||||| | || ||| || ||| ||| || ||| | | Sbjct 105560114 TAGGCATGTCTTTACTGAGGATATTTGTCCAGAGGAGAAATATATTTTTGCCGTCAGTTT 105560055 Query 107203 GGAGTTGAACTTGATGTTC-TGG-----ATTAGTTTGTAATTAAAGGCATTTTGTTCTGT 107256 ||||||||||||||||||| ||| ||||||||||||| | |||||||||||||||| Sbjct 105560054 GGAGTTGAACTTGATGTTCCTGGGAATGATTAGTTTGTAATCAGAGGCATTTTGTTCTGT 105559995 Query 107257 CCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTCCTGATCTCCCATCCCATGA 107316 ||||||| | |||| |||| ||||||||||| |||| | | |||||| || ||| Sbjct 105559994 TCAAGGATTCTTTGCTCCTCCTTCCCTGTGCCCAACCTCTACCGGCTTCCCATTCCGTGA 105559935 Query 107317 AGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCT 107376 ||||||| ||||| || || | |||||| ||| | ||||||||||||||||||| Sbjct 105559934 CGATGGCTCAGTGGAGGAG--AG-TCTGCCGGCAGCATTACCTGTGGGCCCTGGGCTGCT 105559878 Query 107377 ATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATT 107436 |||||||||||||| ||||| |||||| |||||| ||||| || |||||||| Sbjct 105559877 ATATGCTGCTGGCCATTGTTGCTCTGAAACTTTCTCTCAGATTAAAATGTGACCA----- 105559823 Query 107437 CCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATA 107496 | |||| || |||||||||| || || || |||||||||||||| || |||||||| Sbjct 105559822 -CCTGGACTTGCAGTCCAGGGAGTTTCAAAGCCAGCACTGTAGGGATATCTTGTACAAGT 105559764 Query 107497 GCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGG 107556 |||||| |||||||||| ||||||||||||||| || ||||| | ||||||||||||| Sbjct 105559763 CCCTGAAACTGCCAGCAAGGAGATCCATCAACTGCTCCAGGATCGCCCGAGGGGACCAGG 105559704 Query 107557 AAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCA 107616 |||||||| | ||||| || || | |||||||| || ||||| |||||| || ||| Sbjct 105559703 AAGCAGTGCTTCAGGCTCTTCTGAATAACCTGGAGGTCAAGAACAAGCGGGAACCCTTCA 105559644 Query 107617 CTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGT 107676 | | | | |||||| | |||||| ||||||||||||| |||||| ||||||||| Sbjct 105559643 CAGATGCAGACTACCTCCAGGCGACCAGACACTGTGAGCGCTTTAAGGCCAAAAGGAAGT 105559584 Query 107677 TCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGG 107736 ||||||||||||||||||| ||||||||| | |||||||| |||| ||||| ||||||| Sbjct 105559583 TCATACAGTTCCCACTGAGCAAAGAAGAGTTGGACTTCCCTCTTGCGTACTCAATGGTGG 105559524 Query 107737 TCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACA 107796 | ||||||||||| |||||||||||| || |||| ||||| ||||| ||||||||||||| Sbjct 105559523 TTCATGAGAAGATCGAAAACTTTGAAAGGTTGCTTCGAGCTGTGTACGCCCCTCAGAACA 105559464 Query 107797 TATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCA 107856 ||||||| ||||| ||||||| |||||||||||| |||||||||||||| |||| ||| | Sbjct 105559463 TATACTGCGTCCATGTGGATGAGAAGTCCCCAGACACTTTCAAAGAGGCAGTCAGGGCGA 105559404 Query 107857 TTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCT 107916 ||| ||| |||||||| || |||||||| |||||||| |||| |||||||||||||||| Sbjct 105559403 TTACTTCATGCTTCCCAAACGTCTTCATTGCCAGTAAACTGGTTCCGGTGGTTTATGCCT 105559344 Query 107917 CCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGC 107976 |||||||| | ||||| |||||||||||||| ||||| |||||||||||||||||||||| Sbjct 105559343 CCTGGTCCCGGGTGCAGGCTGACCTGAACTGCATGGAGGACTTGCTCCAGAGCTCAGTGC 105559284 Query 107977 CATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGA 108036 ||||||| ||||| |||||||| || ||||||||||| || ||||||||||| || |||| Sbjct 105559283 CATGGAAATACTTCCTGAATACGTGTGGGACAGACTTTCCTATAAAGACCAACGCTGAGA 105559224 Query 108037 TGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTG 108096 |||||| |||||||||||||||||| || | |||||||||||| || ||| | ||| ||| Sbjct 105559223 TGGTCCAGGCCCTCAAGATGTTGAATGGAAGGAACAGTATGGAATCGGAGATCCCTACTG 105559164 Query 108097 AGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCA 108156 ||| |||| | ||||||||| | | ||||||||||| ||||||| ||||| |||| Sbjct 105559163 AGTACAAAGCACTGCGCTGGAAACATCACTATGAGGTGAGAGACACATTGTACATAACCA 105559104 Query 108157 GCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTG 108216 ||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| | | Sbjct 105559103 GCAAGATGAAGGACCCTCCCCCTAATAATTTAACCATGTTCACGGGGAATGCCTATATGG 105559044 Query 108217 TGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTG 108276 |||| || |||| ||||||||||||||||||| | ||||| ||||||||| |||| ||| Sbjct 105559043 TGGCTTCCCGAGACTTTGTCCAACATGTCTTAAAGAACCCCAAATCCCAACAACTGATTG 105558984 Query 108277 AATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTC 108336 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 105558983 AATGGGTAAAAGACACCTATAGCCCCGATGAACACCTCTGGGCCACCCTTCAGCGTGCAC 105558924 Query 108337 CGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCA 108396 |||||||||||||||||||| |||| |||||||| ||||||||||||||||| ||| Sbjct 105558923 GATGGATGCCTGGCTCTGTTCCCTACCACTCCAAGTATGACATCTCAGACATGACTTCCA 105558864 Query 108397 TCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATG 108456 | |||||||| || |||||| || | || |||||||| |||| | |||||| || |||| Sbjct 105558863 TTGCCAGGCTGGTTAAGTGGGAGGAGCATGAGGGAGACGTCAATAAGGGGGCACCATATG 105558804 Query 108457 CACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACT 108516 |||| |||||||||||||| | | |||| ||||| ||||| || || ||||||||| ||| Sbjct 105558803 CACCTTGCTCTGGAATCCACCAGCGGGCTATCTGTATTTATGGAGCTGGGGACCTGCACT 105558744 Query 108517 GGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACG 108576 |||| || |||||||||||||| ||||| ||||| |||||||| | ||| || ||||| | Sbjct 105558743 GGATGCTTCAGAACCATCACCTGTTGGCCAACAAATTTGACCCAAAGGTAGACGATAATG 105558684 Query 108577 TCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 | || |||||||||||||||||||||||| | ||||||||||| ||||| ||||| |||| Sbjct 105558683 TTCTTCAGTGCTTAGAAGAGTACCTACGTTACAAGGCCATCTACGGGACCGAACTCTGAG 105558624 Query 108637 CTGCACTGT-------------------GGGCCAGGGACTGTGCCAACATGCCCAGGGCG 108677 |||||||| |||| || |||||||| |||||||||| | Sbjct 105558623 ATGCACTGTGAGAGAATTGCTACTTGTGGGGCAAGAGACTGTGCAGACATGCCCAGAACT 105558564 Query 108678 TACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGCATCCCCCAGGGTC 108737 | |||| || |||||| |||| ||| |||||| |||||||| || ||||||| || | Sbjct 105558563 TCCTGGGACACTGTGGGCTGGGAGACCAGGGCTTTGGAATCCTTGACATCCCCTGGGATG 105558504 Query 108738 AGAGGGCTGCT 108748 || |||||||| Sbjct 105558503 AGGGGGCTGCT 105558493 >seq4546 Length=144923918 Score = 104 bits (114), Expect = 2e-17 Identities = 193/276 (70%), Gaps = 12/276 (4%) Strand=Plus/Minus Query 108288 GACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTG-GATGCC 108346 ||||| || ||||| || || | ||||||||||| | || | | ||| || | | || Sbjct 11860536 GACACGTACAGCCCAGATGAGTATCTCTGGGCCACTATCCAAAG-GATCCCTGAGGTCCC 11860478 Query 108347 TGGCTCTGTT--CCT-AGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 ||||||| | ||| ||||| ||||| || | || |||||| || | ||||| Sbjct 11860477 TGGCTCTCTCTCCCTGAGCCAT---AAGTACGACTTGTCTGACATGCAGGCGGTTGCCAG 11860421 Query 108404 GCTCGTCAAGTGGCAGTACCACGAGG--GAGATGTCAGCATGGGGGCGCCTTATGCACCC 108461 | | ||||||||||||||| |||||| || ||||| | ||| || || || ||||| Sbjct 11860420 GTTTGTCAAGTGGCAGTACTACGAGGGTGACATGTC--TAAGGGCGCTCCCTACCCACCC 11860363 Query 108462 TGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATT 108521 ||| || ||||| | | | | ||||||| || ||||| ||| || ||||||| Sbjct 11860362 TGCAACGGCATCCACGTGCGCTCGGTGTGCATTTTTGGAGCCGGAGACTTGAACTGGATG 11860303 Query 108522 CTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || | || || ||| | || || || ||||||||| Sbjct 11860302 CTGCCCAAGCACCACTTGTTTGCCAATAAGTTTGAC 11860267 Score = 86.0 bits (94), Expect = 4e-12 Identities = 227/343 (66%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || ||||||||| | || || || || || || || ||||| || | || Sbjct 11861139 CCCCTTAGCAAAGAAGAGGAGCAGTTTCCAATAGCATATTCCATAGTGGTTCACCACAAA 11861080 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| | || |||| ||| | ||| | ||| ||||||||| | ||||| | Sbjct 11861079 ATTGAAATGCTGGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAACTTCTACTGCATT 11861020 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || || ||| | ||| || || || |||| ||| |||| Sbjct 11861019 CACGTGGACAGAAAATCAGAGGAGTCCTTCTTAGCCGCAGTGAAGGGCATCGCGTCCTTT 11860960 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| || ||||| |||||||| |||||| |||||||||| || ||| | Sbjct 11860959 TTCAGTAACGTCTTTGTGGCCAGTCAGTTGGAGAGTGTGGTTTATGTGTCATGGAGTCGC 11860900 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || || ||||| ||||| ||| | ||| || | | || | || || ||||||| Sbjct 11860899 GTTCAGGCCGACCTCAACTGCATGAAGGACCTG-TACGGAA-TGAGCGCACGCTGGAAGT 11860842 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 |||| | ||| ||||| | || || || || || ||||| Sbjct 11860841 ACTTGATAAATCTGTGCGGCATGGATTTTCCTATTAAAACCAA 11860799 >seq1582 Length=98468360 Score = 95.1 bits (104), Expect = 8e-15 Identities = 229/343 (67%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || ||||||||| | || || || || || || | ||||| || | || Sbjct 21621974 CCCCTTAGCAAAGAAGAGGAGCAGTTTCCAATAGCATATTCCTTAGTGGTTCACCACAAA 21621915 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| | || |||| ||| | ||| | ||| ||||||||| | ||||| | Sbjct 21621914 ATTGAAATGCTGGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAACTTCTACTGCATT 21621855 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || || ||| | ||| || ||||| |||| ||| ||||| Sbjct 21621854 CACGTGGACAGAAAATCAGAGGAGTCCTTCTTAGCCGCGGTGAAGGGCATCGCGTCCTGT 21621795 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| || |||||| |||||||| |||||| |||||||| || || ||| | Sbjct 21621794 TTCAGTAACGTCTTCGTGGCCAGTCAGTTGGAGAGTGTGGTTTACGCGTCGTGGAGTCGC 21621735 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || || ||||| ||||| ||| | ||| || | | || | || || ||||||| Sbjct 21621734 GTTCAGGCCGACCTCAACTGCATGAAGGACCTG-TACGGAA-TGAGCGCACGCTGGAAGT 21621677 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 |||| | ||| ||||| | || || || || || ||||| Sbjct 21621676 ACTTGATAAATCTGTGCGGCATGGATTTTCCTATTAAAACCAA 21621634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348236210529372