Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1230 257 1e-63 seq233 105 5e-18 >seq1230 Length=159902609 Score = 257 bits (284), Expect = 1e-63 Identities = 513/760 (68%), Gaps = 0/760 (0%) Strand=Plus/Plus Query 20015 TGCAATCTCGATATAACTTGAGAAATGAATTTCCCTTATTAACTACGAAACGGGTATTTT 20074 |||| | || || | | ||||| |||||||||| | | || || |||| || || | Sbjct 40601866 TGCAGGCGCGCTACAGCCTGAGAGATGAATTTCCTCTGCTGACAACCAAACATGTGTTCT 40601925 Query 20075 GGAAAGGCGTTGTTGAAGAGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGC 20134 |||| || ||| | || ||||| | |||||||| || ||||| ||||| ||| || | Sbjct 40601926 GGAAGGGTGTTTTGGAGGAGTTGCTGTGGTTTATCAAGGGATCCACAAACGCTAAAGAAC 40601985 Query 20135 TTGTAGAAAAAGGAGTTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCA 20194 | || ||||| ||||| ||| || ||||||| | ||| | | || Sbjct 40601986 TGTCTTCGAAGGGAGTGAAGATCTGGGATGCCAATGGATCCCGAGACTTTCTGGATGGCC 40602045 Query 20195 ATGGATTTGACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGAC 20254 ||||| | | | ||| ||||| ||||| || || ||||| || || ||||| | Sbjct 40602046 TGGGATTCTCTACCAGAGGAGAAGGGGACTTGGGCCCAGTTTATGGCTTCCAGTGGAGGC 40602105 Query 20255 ATTTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAAT 20314 ||||||| || ||||| || ||| | || |||||| || |||||||| || ||| Sbjct 40602106 ATTTTGGGGCCGAATACAAAGATATGGATTCAGATTATTCAGGTCAAGGAGTTGACCAAC 40602165 Query 20315 TACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCG 20374 | ||||| || || || || ||||| |||| ||||||||||||| || | || | Sbjct 40602166 TGCAAAAAGTGATCGATACCATCAAAACCCACCCTGACGACAGAAGAATCATCATGTGTG 40602225 Query 20375 CCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAAT 20434 | ||||| | |||||| | ||| | ||||| |||| || ||||| | || ||||| | Sbjct 40602226 CTTGGAATCCAAAAGATCTCCCTCTGATGGCGCTGCCCCCGTGTCACGTCCTCTGCCAGT 40602285 Query 20435 TTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGAC 20494 | ||||| | | || |||| || || |||| || || || | || ||||| | Sbjct 40602286 TCTACGTGGTGGACGGCGAGCTGTCCTGCCAGCTGTACCAGCGGTCGGGAGACATGGGCC 40602345 Query 20495 TGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTA 20554 |||| | || ||||| || || || || || ||||| ||||| ||||| || || | | Sbjct 40602346 TGGGCATGCCATTCAACATCGCCAGCTACGCCCTGCTCACGTACATGATCGCGCACATCA 40602405 Query 20555 CAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATC 20614 | | || | |||||||| || || || | ||||| || || |||||||| |||| Sbjct 40602406 CCCGGCTCAAGCCAGGTGACTTTGTTCATACTTTGGGAGATGCACACATTTACCTGAATC 40602465 Query 20615 ATATAGAACCTTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCA 20674 | || || || | || | ||| | ||| |||||| || ||||| | || | Sbjct 40602466 ACATCGAGCCGCTGAAGATTCAGCTTCAGCGAGAACCAAGACCTTTCCCGAAGCTCAAAA 40602525 Query 20675 TTACTCGAACTGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTT 20734 | ||||| ||| | ||| | ||||| |||||||| || ||| | ||||||| Sbjct 40602526 TCCTTCGAAAAGTTGAGACAATTGATGATTTAAAAGCTGAAGACTTTAAGACTGAAGGTT 40602585 Query 20735 ATAATCCCCATAATTCAATTCCAATGGAAATGTCTGTTTA 20774 ||||||| ||| | ||| |||||||||| ||||||| Sbjct 40602586 ATAATCCGCATCCAACTATTAAAATGGAAATGGCTGTTTA 40602625 >seq233 Length=141296404 Score = 105 bits (116), Expect = 5e-18 Identities = 289/438 (66%), Gaps = 6/438 (1%) Strand=Plus/Minus Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397 ||| | ||||| | ||||||||||| || | || || |||| | |||| | | ||| Sbjct 68913763 AAATCCAACCCTCATGACAGAAGAATCATCATGTGTGCTGGGAATCCAAAAGTTCTTCCT 68913704 Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTG 20457 | ||| | |||||| || ||| || ||||| || || || | ||| |||| || Sbjct 68913703 CTGATGTCGCTGCCTCTGTGCCATGCCCTCTGCCAGTTCTATGTGGTGAATGATGAGCTG 68913644 Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 || || |||| || | || | || || || | || | | ||||| || || Sbjct 68913643 TCCTGCTGTTTGTACCAGTGGTCAGGAGACATAGGCTTTGGCATGCAGTTCAACATCGCC 68913584 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTA 20577 || ||||| |||||||| || ||||| ||||| |||| | | |||| | ||||||| Sbjct 68913583 AGCTATGCCCTGCTTACATACATGATAGCACACATTACTGGTCTAAAGCCCAGTGACTTT 68913524 Query 20578 GTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAG 20637 || | || | ||| | || ||||||||||| ||||| || | || |||| | ||| Sbjct 68913523 GT-AATACTTTGGGAAATGCACATATTTACCTAAATCACATTGGGCCACTAAAGATTCAG 68913465 Query 20638 TTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATATT 20697 | | | || ||| || ||||||| || || | | || ||| || | Sbjct 68913464 CTTCAGCAAGAATCAAGACCTTTCCCAAAGCTCAAAATCATTTAAAAAGTT---GAGACA 68913408 Query 20698 AACGATTTTAAAGCTGATGA-TTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTCC 20756 | ||||| ||||| || | ||| | ||| ||||||||||||| || | ||| Sbjct 68913407 ATTGATTTCAAAGCCGAGAACTTTAATATTA-AAGGTTATAATCCATATCCAACTATTAA 68913349 Query 20757 AATGGAAATGTCTGTTTA 20774 |||||||||| ||||||| Sbjct 68913348 AATGGAAATGGCTGTTTA 68913331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399146646107710