Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq3640 361 5e-95 seq1230 123 2e-23 seq702 82.4 7e-11 >seq3640 Length=31815103 Score = 361 bits (400), Expect = 5e-95 Identities = 617/887 (70%), Gaps = 12/887 (1%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || |||||| | |||||||| | ||||| || |||||||||||||| || ||| Sbjct 24467992 GACATCACTCCCATTCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 24468051 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017 ||||||| ||||| |||||||| |||||||||||| | | ||||| || | || Sbjct 24468052 TCCAGTGCAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAACACCTTGCTAAAA 24468111 Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 || ||||| | | | ||| || || | || ||||| || || |||||| ||| Sbjct 24468112 CCCAGTTCCAGCATAAGTCTGTCAGCCACAAATTCAATGTACTGCTTCATTAACATGCAA 24468171 Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137 ||||| || || || || ||||| | | || | || || | | ||| ||| Sbjct 24468172 TTCATCCCAATGAGCTTCACAGGCAAGGCGTCAGTGAGGAACTCCTCCTGTATCCTAACA 24468231 Query 14138 GCCTCGTTTATAATAATCGTAATAATTTCA--TTAGAAGGAGGATATTTTAGATGTTTAA 14195 || | | | || || || | || | || | || || || | || ||||| | Sbjct 24468232 GCATTGATAATTATT-TCTTT-TACTCTCTGCTCCGACGGTTTATGTACCAGGTGTTTGA 24468289 Query 14196 AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAA 14255 | || | || ||||| ||||| || | ||||||||||| ||||||||||| || |||| Sbjct 24468290 ACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAA 24468349 Query 14256 ATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGG 14315 |||| | || ||||||| ||||||||| || | ||| ||||||| || || || || | Sbjct 24468350 ATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAG 24468409 Query 14316 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTT 14375 ||||||| || || || ||||||||||| |||| | ||||||||| | | || | || Sbjct 24468410 AAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTT 24468469 Query 14376 TGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAA 14435 ||| | ||| | ||||| || | || || || | | || ||| |||| || Sbjct 24468470 TGTCCCCAATCTAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTAAA 24468529 Query 14436 TAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGC 14495 | ||||| || | || |||| | ||||| | | | |||||| |||||||| || | | Sbjct 24468530 TGGCATTGAAGAGATATTCCCTTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGAC 24468589 Query 14496 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14555 ||||||||||||| || ||||||||||| || || || || ||||| ||||| | ||| | Sbjct 24468590 TATACATTTCAGAATGCATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCCT 24468649 Query 14556 CTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14615 ||| || || ||| | ||||| || |||| |||||||| ||||| ||||||| Sbjct 24468650 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 24468709 Query 14616 TAGCTGCAAAAAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTT 14673 |||||||||| || ||| || ||| | || || |||| ||| ||| | || Sbjct 24468710 TAGCTGCAAAGAAAGCCAGAACATGCGAT--ATGAAATATTTCTCATCAGGCTTCAGAGC 24468767 Query 14674 TTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCA 14731 || ||| | ||| || ||||| |||||||| || || | | |||||||| ||| Sbjct 24468768 TTCCCAGT--GCTGAATGTCCTTGGAAAGATCCACCTCCTTGGCCGTCCAAAAGGAAGCC 24468825 Query 14732 ACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14778 ||||||| ||||||||| ||| || || | ||| |||||||| Sbjct 24468826 TCAGCTTTCTTATACATTTGCCAAATATCATGGTATTCGATAGGAAA 24468872 >seq1230 Length=159902609 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 150440333 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 150440392 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||||| || || || || |||||||| || || || ||||||||||| | Sbjct 150440393 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 150440452 Query 14346 CTATTAATCGTTCTCC 14361 ||| | |||||||| Sbjct 150440453 CTACAACCCGTTCTCC 150440468 Score = 113 bits (124), Expect = 4e-20 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || |||||| | || ||||||| ||||||||| | Sbjct 150431939 CCTCATCTCTGCTAATAAGTTCATTG--AAATGTGGAGCCGGGCATCAGTCCTCGTTTCT 150431996 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||||| || || || || |||||||| || || || ||||||||||| | Sbjct 150431997 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 150432056 Query 14346 CTATTAATCGTTCTCC 14361 ||| | |||||||| Sbjct 150432057 CTACAACCCGTTCTCC 150432072 Score = 109 bits (120), Expect = 5e-19 Identities = 109/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || |||||| | Sbjct 150442378 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATTCT 150442436 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||||| | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 150442437 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 150442496 Query 13975 CATAAAATCAAATGGATTT 13993 |||||| |||||||||||| Sbjct 150442497 CATAAAGTCAAATGGATTT 150442515 Score = 93.3 bits (102), Expect = 4e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| |||||||| || | |||||||||||||| |||||||||||||| || || || Sbjct 150438699 AATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 150438758 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | |||||||| Sbjct 150438759 GAAGCCATAGAAACAGCGAGCTTCTG 150438784 >seq702 Length=116768492 Score = 82.4 bits (90), Expect = 7e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || |||||||| |||||||||| |||||||| |||||||||||||| || ||| Sbjct 5323392 GATATCACTCCCATTTTCTGATATTCACCTACTCTTTTCTCAAAGAAGTTAGTGTTTCCT 5323451 Query 13958 TCCAGTGA 13965 |||||||| Sbjct 5323452 TCCAGTGA 5323459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482299306881040