Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3640 91.5 1e-13 seq2763 91.5 1e-13 seq1 87.8 1e-12 seq520 86.0 5e-12 >seq3640 Length=31815103 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | | || | |||| Sbjct 21636567 AGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCT 21636508 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || ||||| || | ||||||||| || Sbjct 21636507 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCT 21636448 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | ||| ||||| | |||||| || | ||||||| | Sbjct 21636447 TGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTC 21636388 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||||||||| || || ||||| || |||||| Sbjct 21636387 TTGCCGGTCAGGGTCTTCACAAAGATCTGCATT 21636355 >seq2763 Length=65901067 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | | || | |||| Sbjct 60922689 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 60922630 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || || | ||||||||||| Sbjct 60922629 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCC 60922570 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | ||||||| |||||| || | ||||||| | Sbjct 60922569 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTC 60922510 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||||| || || ||||| ||||||||||| Sbjct 60922509 TTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTT 60922475 >seq1 Length=114275543 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/245 (68%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || |||||| Sbjct 8597735 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA 8597676 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||| | ||| ||||| ||| | || |||||| Sbjct 8597675 ATGTTGTAGTCAGACAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTT 8597616 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| || | ||| || | | | | || Sbjct 8597615 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTA 8597556 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| || ||||| ||||| |||| || || | |||||||| ||||| ||| Sbjct 8597555 TCCGAGGGTTCAACTTCAAGAGTGATAGTTTTTCCTGTAAGGGTTTTTACGAAAATCTGC 8597496 Query 18324 ATTTT 18328 || || Sbjct 8597495 ATCTT 8597491 >seq520 Length=73916538 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| | || || ||||| || ||||||||||| | | || | |||| Sbjct 72484112 AGGACCAAGTGCATGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCT 72484171 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || |||| ||| | ||||||||| || Sbjct 72484172 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCGGATCAGGGGGAATGCCTTCCTTGTCT 72484231 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | ||| || |||| |||||| || | ||||||| | Sbjct 72484232 TGGATCTTTGCCTTGACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGTGATGGTC 72484291 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| || || ||||| || ||||| Sbjct 72484292 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 72484323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379308502648110