Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq702 107 2e-18 seq1 100 3e-16 seq233 93.3 4e-14 seq2763 91.5 1e-13 seq3641 84.2 2e-11 seq1582 82.4 7e-11 >seq702 Length=116768492 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || || || || ||||| || ||||| ||||| || || || || Sbjct 56452557 ACCTCATCTTTGCTGGTATATTCCACTATTTCTGTGCATAGGTTGCTGCATTTGATGGTT 56452616 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || |||||||| ||||||||||| || || Sbjct 56452617 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCCTTATAGAGCATGTATGGGGTT 56452676 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 56452677 CCTGTCTCTGTCTGAGACTCAATGATGGC 56452705 >seq1 Length=114275543 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||||||||| || || ||||| ||||| ||||| | || |||||||| Sbjct 8597491 AAGATGCAGATTTTCGTAAAAACCCTTACAGGAAAAACTATCACTCTTGAAGTTGAACCC 8597550 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 8597551 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 8597610 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || | ||||| | | | ||| || || || Sbjct 8597611 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGA-TGGACGTACTTTGTCTGACTA 8597669 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 8597670 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 8597711 >seq233 Length=141296404 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||||||||| || || ||||| || || ||||| |||| || ||||| Sbjct 108314880 AAGATGCAGATTTTCGTAAAAACCCTTACAGGAAAGACTATCACTCTCGAGGTCGAACCC 108314939 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 108314940 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGAT 108314999 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || | ||||| | | | ||| || || || Sbjct 108315000 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGA-TGGACGTACTTTGTCTGACTA 108315058 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||| | || ||||||||||| || | ||||| | || |||| Sbjct 108315059 TACCATTCAAAAGCAGTCCACTCTTCATCTTGTGTTGAGACTTTGTGGTGGTA 108315111 Score = 82.4 bits (90), Expect = 7e-11 Identities = 163/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||||||||| || || ||||| || || ||||| | || || ||||| Sbjct 109921895 AAGATGCAGATTTTCGTAAAAACCCTTACAGGAAAGACTATCACTCTGGAGGTCGAACCC 109921836 Query 31250 TCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAG---CGGACAAGGAAGGCGTGCCGCC 31305 || || | | |||| || || | ||| || ||| || ||||| | || || Sbjct 109921835 TCGGATACAATAGAAAATGTAAAGGCCAAGATAAGGCCAGGATAAAGAAGGAATTCCTCC 109921776 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCG 31364 || ||||| | || || || |||||||| || | ||||| | | | ||| || | Sbjct 109921775 TGATCAGCAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGA-TGGACGTACTTTGTCTG 109921717 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | || |||||||| || || || ||||||||||| || | ||||| | || |||| Sbjct 109921716 ACTACAACATTCAGAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTTGTGGTGGTA 109921660 >seq2763 Length=65901067 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||||||||| || | ||||| || || ||| | |||| |||||||| || Sbjct 824455 ATGCAGATTTTCGTAAAAACCCGTACAGGAAAGACTATCCCTCTCGAGGTTGAACCCTCG 824396 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || || | || ||| |||||||| | || || || ||| Sbjct 824395 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 824336 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | || || || |||||||| || | ||||| | | | ||| || || || || Sbjct 824335 CAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGA-TGGACGTACTTTGTCTGACTACAA 824277 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||| || || ||||||||||| || | ||||| Sbjct 824276 CATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 824238 >seq3641 Length=30143674 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| || | | |||||| | || || || || Sbjct 24919680 ATGCAGATCTTTGTGAAGACCCTGACGGGGA---CCATCACCCTTGAGGTCGAGCCCAGT 24919736 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| |||||||| ||| | || || |||||| Sbjct 24919737 GACACCAT-GAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 24919795 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| ||||| | ||||||||| |||| || ||| | ||||| ||| Sbjct 24919796 CAGCGTCTGATATTTGGGGGCAAACAGCTGGAGGATGGCCGCACTCTTTCGGATTACAAC 24919855 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||| || || || || ||||| ||| | ||||| || || Sbjct 24919856 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTTCGTCTGAGAGGTGG 24919902 >seq1582 Length=98468360 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/220 (70%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC-GTC 31251 ||||| ||||| || ||| | ||||| ||||| || |||||| | || || | || || Sbjct 98015845 ATGCAGATTTT-GTGAAGTCCCTGACGGGCAAGACCATCACCCTTGAGGTCCACCCAGT- 98015902 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | |||||| | ||| || ||||| ||| || | ||||| Sbjct 98015903 -GACACCATCGAGAATGTCAAAGTCAAAATCCAAGATAAGGAGGGCAC-CCACTTGACCA 98015960 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| ||||| || ||||||||| |||| || ||| | | |||| || Sbjct 98015961 GCAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTTTCCAATTACAA 98016020 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTG 31411 |||||| || || || || || || ||||| ||| | ||| Sbjct 98016021 CATTCAGAAGGAGTCCACCCTGCACCTGGTGCTTCGTCTG 98016060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445723617569760