Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3640 140 6e-28 seq1230 87.8 4e-12 >seq3640 Length=31815103 Score = 140 bits (154), Expect = 6e-28 Identities = 297/440 (68%), Gaps = 5/440 (1%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||||||||| ||||| ||||||||| |||| | || ||||| || |||| Sbjct 24468445 TTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCAATATTCT 24468386 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| | || | ||||||| ||||| | |||||||| | ||| || | Sbjct 24468385 GGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAG 24468326 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCC 102095 | || ||| | || | |||||||| ||| || |||| ||| | | || ||| | Sbjct 24468325 ATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACA---CCTGGTACATAAAC 24468269 Query 102096 CATCAAGAG-AAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 | || ||| | || | ||||| | | | || || | || | | || || Sbjct 24468268 CGTC-GGAGCAGAGAGTAAAAGAAATAATTATCAATGCTGTTAGGATACAGGAGGAGTTC 24468210 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 ||||| | || ||||||| || | | || ||||| |||| ||| |||| |||||| Sbjct 24468209 CTCACTGACGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCATGTTAATGAAGCAGTAC 24468150 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTT 102274 |||||||||||||| || | ||| || | ||| |||| | ||| | | || Sbjct 24468149 ATTGAATTTGTGGCTGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGTGTTCAGAGTA 24468090 Query 102275 ACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAA 102334 || || || || ||||| |||||| | || || ||||| ||||| ||||| Sbjct 24468089 GAAAATCCATTTGACTTTATGGAGAATATTGCACTGGAAGGAAAGACTAACTTCTTTGAG 24468030 Query 102335 AAGAGAGTCGCCGAGTATCA 102354 |||||||| | ||| ||||| Sbjct 24468029 AAGAGAGTAGGCGAATATCA 24468010 >seq1230 Length=159902609 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||||||||| ||||| ||||||||| |||| | || ||||| || |||| Sbjct 150440458 TTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCAATATTCT 150440399 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || ||||||| | || | |||| || ||||| | |||||||| Sbjct 150440398 GGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGA 150440353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989486650292490