Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3640 345 4e-90 seq1230 125 7e-24 seq1231 120 3e-22 seq702 104 2e-17 >seq3640 Length=31815103 Score = 345 bits (382), Expect = 4e-90 Identities = 627/908 (69%), Gaps = 17/908 (2%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | | ||| | ||| ||||| | |||||||| | |||| || | || | Sbjct 24467976 ATTCTCTATTGGACTTGACATCACTCCCATTCTCTGATATTCGCCTACTC-TCTTCTCAA 24468034 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || |||||||| ||||| |||| |||| |||||||||| ||| ||||| | ||| Sbjct 24468035 AGAAGTTAGTCTTTCCTTCCAGTGCAATATTCTCCATAAAGTCAAATGGATTTTCTACTC 24468094 Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 |||| || || | |||| | || | | ||| || || || ||||| || |||| Sbjct 24468095 TGAACACCTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCAGCCACAAATTCAATGTACT 24468154 Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546 | |||||| |||||||| || || || | ||| || | || | || | |||| Sbjct 24468155 GCTTCATTAACATGCAATTCATCCCAATGAGCTTCACAGGCAAGGCGTCAGTGAGGAACT 24468214 Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606 ||| | ||| |||| |||| || ||||| ||| | || || ||| || Sbjct 24468215 CCTCCTGTATCCTAACAGCATTGATAATTATTTCTTTTACTCTCTGCTCCGACGGTTTAT 24468274 Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666 ||| | ||||| ||||| | || ||||| ||||| |||||||| || ||||| || | Sbjct 24468275 GTACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAA 24468334 Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726 | |||||||| |||||||| | || ||||||| ||||||||| || | ||| ||||| | Sbjct 24468335 TAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTG 24468394 Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTC 11786 ||||| |||||||||||||| || || ||||| || ||||| ||||| || | ||||| Sbjct 24468395 ATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACACGTTCTC 24468454 Query 11787 CATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGC 11843 |||| || ||| ||| ||| | ||||||||| || ||||| || || | Sbjct 24468455 CATAGGTAGCCTCTTTGTCCCCAATCTAACGCAAGGCCCAATCTGCCTTCTTCTTGACAC 24468514 Query 11844 ATTCCATTGTTTCTATAGCGTTAAATAAATGCATT--TTTTCTATATTATCTCTTACATA 11901 | ||| |||| || || || || | || ||| ||||| | |||| | | || Sbjct 24468515 AAGGCATCGTTTAAATGGCATTGAAGAGAT--ATTCCCTTTCTTTGGAATCTTTAATGTA 24468572 Query 11902 TGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCC 11961 ||||| || | | |||||||||||| ||||| || |||||||| || ||||| || || Sbjct 24468573 AGTATCAATGAGGAGACTATACATTTCAGAATGCATGTTTTCCATGGCAATTTGGAAGCC 24468632 Query 11962 ATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTC 12021 ||||||||| || ||||||| | ||| || || ||||| ||| | || || || Sbjct 24468633 ATAGAAACAGCGAGCCTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTC 24468692 Query 12022 ATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC 12081 |||||| || |||||||||| |||||| || || || | ||| ||| || ||||| || Sbjct 24468693 ATTTACTATGCCATCACTAGCTGCAAAGAAAGCCAGAACATGCGATATGAAATATTTCTC 24468752 Query 12082 ----GTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAA 12137 | ||| || | | ||||| | | | || || || | ||| || || | Sbjct 24468753 ATCAGGCTTCAG--AGCT--TCCCAGTGCTGAATGTCCTTGGAAAGATCCACCTCCTTGG 24468808 Query 12138 CGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAG 12197 | |||||||| ||| | | || |||||||||| ||| |||||||| || | |||| Sbjct 24468809 CCGTCCAAAAGGAAGCCTCAGCTTTCTTATACATTTGCCAAATATCATGGTATTCGATAG 24468868 Query 12198 GGAAAATA 12205 | || ||| Sbjct 24468869 GAAAGATA 24468876 >seq1230 Length=159902609 Score = 125 bits (138), Expect = 7e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| |||||||| | |||||||||| ||||||||| || Sbjct 150440335 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 150440394 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| || || ||||| || ||||| ||| Sbjct 150440395 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 150440454 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 150440455 ACAACCCGTTCTCC 150440468 Score = 113 bits (124), Expect = 4e-20 Identities = 106/134 (79%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| |||||| | |||||||||| ||||||||| || Sbjct 150431941 TCATCTCTGCTAATAAGTTCATTG--AAATGTGGAGCCGGGCATCAGTCCTCGTTTCTTG 150431998 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| || || ||||| || ||||| ||| Sbjct 150431999 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 150432058 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 150432059 ACAACCCGTTCTCC 150432072 >seq1231 Length=116334831 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 53055243 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 53055302 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 53055303 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 53055362 Query 11772 CTACTACTCTTTCTCC 11787 | ||||||||||| || Sbjct 53055363 CCACTACTCTTTCCCC 53055378 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || || ||||||| ||||| ||||| ||||| |||| ||| || || Sbjct 53059448 ATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACATTCTCGATGAG 53059507 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || ||||||| | |||||| ||| Sbjct 53059508 AATTTGAAAGCCATAGAAACAACGAGCCTCTGGAACCTGTACCTCC 53059553 >seq702 Length=116768492 Score = 104 bits (114), Expect = 2e-17 Identities = 124/169 (73%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 37111 AGTTCTCTCAATAGGTGTGGATTTACA------ACCTGAAAATCTCCAGATAATACTCTT 37164 || |||||| |||||| ||| | | | |||||||| ||||| || || ||||| Sbjct 56442930 AGATCTCTCTATAGGTCTGGTTGTGAACTGCTCACCTGAAATTCTCCTGACAAGACTCTG 56442989 Query 37165 CTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGAT 37224 | ||||| || ||||| || || |||||||||||||||||||| | | || |||| Sbjct 56442990 CGAGTATAAATGTTGCTGGTGTAAGGTTCAATGGACTCATTATTCCCCAGGATCTGAGCA 56443049 Query 37225 GTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCAT 37273 || || |||||||||||||| || || || | || ||||| | |||| Sbjct 56443050 GTTGAAGCAGTAGGCATTGGAGCAATAAGTAAACTGTTTCTTATACCAT 56443098 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| || |||||||| || ||||| | || |||| | | | |||| || Sbjct 56440509 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 56440568 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || || |||||||| || || |||||||| ||||||||||| | | || | || Sbjct 56440569 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 56440628 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 | ||||| || ||||| || |||||||| | ||| || Sbjct 56440629 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTT 56440665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468479833332320