Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1230 325 3e-84 seq3188 150 2e-31 seq233 114 1e-20 seq1231 105 6e-18 seq702 100 2e-16 seq1789 93.3 4e-14 seq4546 84.2 2e-11 >seq1230 Length=159902609 Score = 325 bits (360), Expect = 3e-84 Identities = 519/738 (70%), Gaps = 5/738 (1%) Strand=Plus/Minus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||||| | ||| || || | ||| || ||||| ||| || || ||||| || || Sbjct 40602490 AGCTGAATCTTCAGCGGCTCGATGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTATGA 40602431 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAG 21032 |||||||| || || | || | |||| ||| ||||||| ||||| || ||||||||| Sbjct 40602430 ACAAAGTCACCTGGCTTGAGCCGGGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAG 40602371 Query 21033 CTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||||||||| || || | || ||||||||||| | |||| |||||||||||||||| Sbjct 40602370 CTGGCGATGTTGAATGGCATGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAG 40602311 Query 21093 GACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||||||| || ||||||| ||||| || | |||||||| || || || |||||| Sbjct 40602310 GACAGCTCGCCGTCCACCACGTAGAACTGGCAGAGGACGTGACACGGGGGCAGCGCCATC 40602251 Query 21153 CGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTG 21212 | | ||| || || ||||| || ||||| | ||| | | |||| || | | Sbjct 40602250 AGAGGGAGATCTTTTGGATTCCAAGCACACATGATGATTCTTCTGTCGTCAGGGTGGGTT 40602191 Query 21213 TTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCG 21272 || || ||| | ||| | |||| ||||| || || ||||| || | | || Sbjct 40602190 TTGATGGTATCGATCACTTTTTGCAGTTGGTCAACTCCTTGACCTGAATAATCTGAATCC 40602131 Query 21273 GCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCG 21332 | |||| || ||||||||||| ||||||||||| || || || || |||| || Sbjct 40602130 ATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCC 40602071 Query 21333 CCCTCGCGGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCC 21392 || || | | | ||| ||| | | ||| |||| | ||||| || | || ||| Sbjct 40602070 CCTTCTCCTCTGGTAGAGAATCCCAGGCCATCCAGAAAGTCTCGGGATCCATTGGCATCC 40602011 Query 21393 CAAATTTTTACGCCGCGGCG-CGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCA 21451 || || || || || | || |||||||| | | || ||||| ||| |||||||||| Sbjct 40602010 CAGATCTTCACTCC-CTTCGAAGACAGTTCTTTAGCGTTTGTGGATCCCTTGATAAACCA 40601952 Query 21452 CAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTC 21511 |||||||||||||| || ||| |||| ||||| |||||| || | ||||||||| || Sbjct 40601951 CAGCAACTCCTCCAAAACACCCTTCCAGAACACATGTTTGGTTGTCAGCAGAGGAAATTC 40601892 Query 21512 GTCCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCT 21571 || || ||| | || || ||||| || |||||||| || |||||| |||||| | Sbjct 40601891 ATCTCTCAGGCTGTAGCGCGCCTGCAGGCCGAACACCTACAGGGTGCCGGTGCCCGTGCG 40601832 Query 21572 GTCCTCCCT-CTGCACGCCGTGTTTAATAATTAAATCCAGGTGCGCCAAGTACTGCAGCT 21630 ||| ||| | ||| | ||| | | || |||| ||| ||| ||||||||||| Sbjct 40601831 GTCGTCCTTCCTGGA-GCCACAGTGGAGGATGTGCTCCACCTGCCCCAGGTACTGCAGCT 40601773 Query 21631 CGCCGTG-GTCGCCGCGG 21647 | ||||| | |||| ||| Sbjct 40601772 CCCCGTGCGGCGCCCCGG 40601755 >seq3188 Length=83067054 Score = 150 bits (166), Expect = 2e-31 Identities = 137/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 || || |||| ||| ||||||| ||||| || |||||||||||||||||||| ||||| Sbjct 66355481 AGCCCGGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAACGGC 66355422 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || ||||||||||| | |||| |||||||||||||||||||||||| || || Sbjct 66355421 ACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTCCACC 66355362 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||| ||||| || | ||||||| || || || |||||| | | ||| || Sbjct 66355361 ACGTAGAACTGGCAGAGGGCGTGACACGGGGGCAGCGCCATCAGAGGGAGATC 66355309 >seq233 Length=141296404 Score = 114 bits (126), Expect = 1e-20 Identities = 201/293 (69%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 21285 TCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGG 21344 || |||||| | | ||||||||||| || || || || |||| | | | || | | | Sbjct 68914605 TCTGCCCCATCACGCCTCCACTGGAAGCCATAAACTGGGCCCACACCCCGTTCTCCTCTG 68914664 Query 21345 TCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACG 21404 ||| || || ||||| || | |||| | || || ||||| ||||| || Sbjct 68914665 GTGGAGAACACCAGCCTATCCAAAGAGTCTTGGGATCTGTTGGCATCCCAGATTTTCACT 68914724 Query 21405 CCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCC 21464 || | |||||||| | |||| ||| | ||| ||||||| ||||||||||||||| Sbjct 68914725 CCCTTGGAAGACAGTTCTTTAGAGTTTGTGAATCCCTTGATAAAGCACAGCAACTCCTCC 68914784 Query 21465 ACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTTA 21524 | || ||| |||| ||||| |||||||| || | |||||||| || || || |||| Sbjct 68914785 AAAACACCCTTCCAGAACACACTTTTGGTTGTCAGCAGAGGAAGTTCATCTCTCCGGTTG 68914844 Query 21525 TATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTC 21577 || || |||| | |||| || || |||||| ||| || ||||| || Sbjct 68914845 TAGCGTGCCTCTACGCCGAGCATCTACAGGGTGCCGGTGCCTGTGCTGTCATC 68914897 Score = 102 bits (112), Expect = 7e-17 Identities = 173/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 ||||| ||||| || || || | || | ||| || ||||| || || ||||| | | Sbjct 132920462 TTAAAGGCATCATCCAGACTTTTTGCAACAAAATGAGCTCCTTGTGGAGGTTCCTCGAGT 132920403 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || ||||||||||| | | ||| || ||||| ||||| ||||| Sbjct 132920402 TCTCTACTAAGAACTGCATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 132920343 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || ||| | || || | || | Sbjct 132920342 AACCAGGTCTTCCTGCCCATAATCACCAGATTCTGTTTGCCTGCTACTGAAGAGGTGGTG 132920283 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTT 3202 |||||||| || |||||| | |||||| || || ||||| | || ||||| Sbjct 132920282 GTCATTTTTTGGAAATACTGGAATTCGTTCCTGAGCGGAGGCCAGGCCAGGTCCCCGTTC 132920223 Query 3203 TTACCAATTCC 3213 || ||||| || Sbjct 132920222 TTGCCAATGCC 132920212 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/188 (70%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||||| | || || ||| ||| || ||||| || || | ||||| || | Sbjct 68913463 AGCTGAATCTTTAGTGGCCCAATGTGATTTAGGTAAATATGTGCATTTCCCAAAGTATT- 68913521 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAG 21032 |||||||| | || | || || || | ||| || |||| || || || ||||| ||| Sbjct 68913522 ACAAAGTCACTGGGCTTTAGACCAGTAATGTGTGCTATCATGTATGTAAGCAGGGCATAG 68913581 Query 21033 CTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||||||||| ||| | | || | ||| ||||| | |||| |||||||| |||| Sbjct 68913582 CTGGCGATGTTGAACTGCATGCCAAAGCCTATGTCTCCTGACCACTGGTACAAACAGCAG 68913641 Query 21093 GACAGCTC 21100 |||||||| Sbjct 68913642 GACAGCTC 68913649 >seq1231 Length=116334831 Score = 105 bits (116), Expect = 6e-18 Identities = 205/301 (68%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || | ||| || ||||| || || ||||| | | Sbjct 6981274 TTTAAGGCATCATCCAGACTTTTAGCAACAAAATGGGCTCCTTGTGGAGGTTCCTTGAGT 6981215 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || | ||||||||||| | | ||| || |||| || || ||||| Sbjct 6981214 TCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGACTCTTCTCGGGAATGGAG 6981155 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || ||| | || || | || | Sbjct 6981154 AACCAGGTCTTCCTGCCCATAATCACCAGATTCTGTTTGCCTTCTACTGAAGAGGTGGTG 6981095 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTT 3202 ||||||||||| |||||| | | ||| || || || ||||| |||| ||||| Sbjct 6981094 GTCATTTTCTGGAAATACCTGAATTCATTCCTGAGTGGGGGCCAGGGCAGGTCCCCGTTC 6981035 Query 3203 TTACCAATTCCTAATTGTTC--ATCAACTGCAACGATGCAGTTAACTGTAATGTCCATGG 3260 || ||||| || | ||||| || || ||||||||||| | ||| |||||| Sbjct 6981034 TTGCCAATGCCCA--TGTTCTGGGACACAGCGACGATGCAGTTCAGCGTACGAACCATGG 6980977 Query 3261 T 3261 | Sbjct 6980976 T 6980976 >seq702 Length=116768492 Score = 100 bits (110), Expect = 2e-16 Identities = 204/301 (68%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || | ||| || ||||| || || ||||| | | Sbjct 58908454 TTTAAGGCATCATCCAGACTTTTAGCAATAAAATGAGCTCCTTGTGGAGGTTCCTAGAGT 58908513 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || | ||||||||||| | ||| | ||||| ||||| ||||| Sbjct 58908514 TCTCTACTAAGAACTACATTAATTCTGTCTTTTAAAGGTCAATTCTTCTCAGGAATGGAG 58908573 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | || |||||||| |||| ||||| || ||| | || || | || | Sbjct 58908574 AACCAGGTCTTCTTGCCCATAATCACCAGATTCTGTTTGCCTTCTACTGAAGAGGTGGTG 58908633 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTT 3202 |||||||| || |||||| | | ||| || || || ||||| || | ||||| Sbjct 58908634 GTCATTTTTTGGAAATACTTGAATTCATTCCTGAGTGGGGGCCAGGGGAGGTCCCCGTTC 58908693 Query 3203 TTACCAATTCCTAATTGTTC--ATCAACTGCAACGATGCAGTTAACTGTAATGTCCATGG 3260 || ||||| || | ||||| || || |||| |||||| | |||| |||||| Sbjct 58908694 TTGCCAATGCCCA--TGTTCTGGGACACAGCGACGAGGCAGTTTAGTGTATGAACCATGG 58908751 Query 3261 T 3261 | Sbjct 58908752 T 58908752 >seq1789 Length=108226025 Score = 93.3 bits (102), Expect = 4e-14 Identities = 203/301 (67%), Gaps = 5/301 (2%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || | ||| || ||| | || || ||||| | | Sbjct 65826878 TTTAAGGCATCATCCAGACTTTTAGCAACAAAATGAGCTTCTTGTGGAGGTTCCTTGAGT 65826819 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || | ||||||| ||| | | | | || |||| ||||| ||||| Sbjct 65826818 TCTCTACTAAGAACTACATTAATTTTGTCCTTTAAAAGTCGACTCTTCTCAGGAATGGAG 65826759 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || || | |||||||| || | ||| | || ||| | || || | || | Sbjct 65826758 AACCAGGTCTTTCTGCCCATAATCACAAGATTTTGTTTGCCTTCTACTGAAGAGGTGGTG 65826699 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTT 3202 |||||||| || |||||| | | || || || || ||||| |||| || ||||| Sbjct 65826698 GTCATTTTTTGGAAATACTTGAATTTATTCCTGAGTGGGGGCCAGGGCAG-GTCCCGTTC 65826640 Query 3203 TTACCAATTCCTAATTGTTCATCAACT--GCAACGATGCAGTTAACTGTAATGTCCATGG 3260 || ||||| || | ||||| || || ||||||||||| | |||| |||||| Sbjct 65826639 TTGCCAATGCCCA--TGTTCTGGGACATAGCGACGATGCAGTTTAGTGTACGAACCATGG 65826582 Query 3261 T 3261 | Sbjct 65826581 T 65826581 >seq4546 Length=144923918 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || | ||| || ||||| || || | ||| | | Sbjct 48099411 TTTAAGGCATCATCCAGACTTTTAGCAACAAAATGAGCTCCTTGTGGAGCTTCCTTGAGT 48099352 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || | ||||||||||| | | ||| | ||||| ||||| ||||| Sbjct 48099351 TCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCAATTCTTCTCAGGAATGGAG 48099292 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || ||| | || || | || | Sbjct 48099291 AACCAGGTCTTCCTGCCCATAATCACCAGATTCTGTTTGCCTTCTACTGAAGAAGTGGTG 48099232 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTT 3171 || ||||| || |||||| | | ||| || Sbjct 48099231 GTAATTTTTTGGAAATACTTGAATTCATT 48099203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427735970593440