Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq3640 122 6e-23 >seq3640 Length=31815103 Score = 122 bits (134), Expect = 6e-23 Identities = 396/598 (66%), Gaps = 39/598 (7%) Strand=Plus/Minus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||| ||||| || | || || |||||||| | |||||||||||||| | || Sbjct 24468842 ATGTATAAGAAAGCTGAGGCTTCCTTTTGGACGGCCAAGGAGGTGGATCTTTCCAAGGAC 24468783 Query 22405 GTACGCCATTGGACAGAAAAACTGACCGAGGCTGA-GCGCAGG--TTCATGTCTCACATA 22461 | | || ||| ||| |||| || |||| | | | ||||| || || | Sbjct 24468782 ATTCAGCACTGG---GAAGCTCTGA---AGCCTGATGAGAAATATTTCATATCGCATGTT 24468729 Query 22462 CTGGCATTCTTTGCAATGGCAGATGGCATTGTAGGCGACAACCTTGTGT-GCAATTTCGC 22520 ||||| ||||||||| |||||||| ||| || ||| | ||| || |||| || Sbjct 24468728 CTGGCTTTCTTTGCAGCTAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGC 24468669 Query 22521 AAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATGGA 22580 || ||| || | ||| |||| || | ||||||||| || || | || ||||| Sbjct 24468668 CAA-GAAGTTCAG---ATTACAGAGGCTCGCTGTTTCTATGGCTTCCAAATTGCCATGGA 24468613 Query 22581 AAATATACATGCTGAAATGTATACTCAGCTGATTA----TCACATTA--GTAGCTAAAGA 22634 ||| || ||| |||||||||||| || || ||| | |||||| | | ||||| Sbjct 24468612 AAACATGCATTCTGAAATGTATAGTCTCCTCATTGATACTTACATTAAAGATTCCAAAGA 24468553 Query 22635 GAATCAAGCCGCAT-TGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGC 22691 ||| | || | | |||| || | || ||||| ||||| || ||||| Sbjct 24468552 -----AAGG-GAATATCTCTTCAATGCCATTTAAACGATGCCTTGTGTCAAGAAGAAGGC 24468499 Query 22692 ACAGTGGGC--TGCACAATGGCTGAATGCCACACATAAGT---CTATCGCAACACGTCTC 22746 | | ||||| ||| | | || | ||| | | | |||| | | |||| | Sbjct 24468498 AGATTGGGCCTTGCGTTA-GATTG---GGGACAAAGAGGCTACCTATGGAGA-ACGTGTT 24468444 Query 22747 TTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGG 22806 | |||||||| || || |||||| || | |||||||| || ||||| | ||||||||| Sbjct 24468443 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGG 24468384 Query 22807 CTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGAC 22866 || |||||||| || ||||| || | | |||||||| || | |||||| | || Sbjct 24468383 CTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGAT 24468324 Query 22867 GAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGT 22924 || ||| |||||||||||||||| || || |||| | || ||| | | ||||||| Sbjct 24468323 GAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACACCTGGTACATAAACCGT 24468266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356200265218234