Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3640 118 1e-21 seq520 105 7e-18 seq233 91.5 1e-13 seq1 91.5 1e-13 seq2763 86.0 6e-12 >seq3640 Length=31815103 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-T 139605 || |||| || ||||| | || |||||||| || ||||| || || | |||| | Sbjct 21636573 AAGCGCAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGT 21636514 Query 139606 CGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTC 139665 | | ||||| ||||| || || ||| ||||||| | |||||||| ||||| |||||||| Sbjct 21636513 CCA-TCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCTTC 21636455 Query 139666 TTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| ||| || | | || | |||||| ||||||||||||| | ||| Sbjct 21636454 CTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGGGT 21636395 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||||||||||| || || || || || ||||| Sbjct 21636394 GATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 21636356 >seq520 Length=73916538 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || |||| || ||||| || || |||||||| || ||||| || || | |||| | Sbjct 72484106 AAGCGCAGGACCAAGTGCATGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGC 72484165 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| ||||| || |||||| ||||||| | ||| |||| || || |||||||| Sbjct 72484166 CCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCGGATCAGGGGGAATGCCTTCC 72484225 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| ||| || | | || | || || ||||||| ||||| | ||| Sbjct 72484226 TTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGTG 72484285 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||||||||||| || || || || || ||||| Sbjct 72484286 ATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 72484323 >seq233 Length=141296404 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || |||| ||||||||| |||| || || || | || | ||||| || || Sbjct 108315085 TGAAGAGTGGACTGCTTTTGAATGGTATAGTCAGACAAAGTACGTCCA-TCTTCTAGTTG 108315027 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| | ||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 108315026 CTTGCCAGCAAAAATCAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTT 108314967 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | ||| || | ||| || ||||| | || | ||||| || || Sbjct 108314966 GGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATAGTCTTTCCTGT 108314907 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||||||||| || ||||| Sbjct 108314906 AAGGGTTTTTACGAAAATCTGCAT 108314883 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/208 (71%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| || |||||||| || || || || | || | ||||| || || Sbjct 109921686 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCTAGTTG 109921744 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC--GGTGATT 139678 || |||||| | ||||| | ||||||||| ||||| || |||||||| || || | Sbjct 109921745 CTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGGCCTTA 109921804 Query 139679 TTTTGT--TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGC 139736 | ||| |||| | ||| | ||| || | ||| || ||||| | || | ||||| | Sbjct 109921805 TCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCCAGAGTGATAGTCTTTC 109921864 Query 139737 CGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | ||||||||||| || ||||| Sbjct 109921865 CTGTAAGGGTTTTTACGAAAATCTGCAT 109921892 >seq1 Length=114275543 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| || || || || | || | ||||| || || Sbjct 8597696 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCTAGTTG 8597638 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| | ||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 8597637 CTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 8597578 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | ||| || | ||| || || |||| || | || || || || Sbjct 8597577 GGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACTTCAAGAGTGATAGTTTTTCCTGT 8597518 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||||||||| || ||||| Sbjct 8597517 AAGGGTTTTTACGAAAATCTGCAT 8597494 >seq2763 Length=65901067 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| || || || || | || | ||||| || || Sbjct 824253 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCTAGTTG 824311 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| | ||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 824312 CTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 824371 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | ||| || | ||| || ||||| | | | ||||| || || Sbjct 824372 GGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGGGATAGTCTTTCCTGT 824431 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| || ||||| Sbjct 824432 ACGGGTTTTTACGAAAATCTGCAT 824455 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || |||||||| || ||||| || || | |||| Sbjct 60922692 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 60922633 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| || ||||| || ||||| || Sbjct 60922632 TCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTA 60922573 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| ||||||||||||| | ||| | Sbjct 60922572 TCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATG 60922513 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || || || |||||||| Sbjct 60922512 GTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCAT 60922478 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || | |||| ||||| ||||| || || Sbjct 60923130 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 60923071 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || ||||| || ||||| || || ||| || || Sbjct 60923070 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGGATCTTGGCCTTC 60923011 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || ||||||||||||| | ||| | ||||||||||||| || Sbjct 60923010 ACATTCTCAATGGTATCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTC 60922951 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 60922950 TTGACGAAAATCTGCATA 60922933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496016390257600