Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3640 444 8e-120 seq1230 132 7e-26 seq702 114 2e-20 seq1231 111 2e-19 seq4546 89.7 7e-13 >seq3640 Length=31815103 Score = 444 bits (492), Expect = 8e-120 Identities = 662/936 (71%), Gaps = 10/936 (1%) Strand=Plus/Plus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 49669 |||| ||| || |||| | | |||| ||| ||| | || ||||| ||||||||| Sbjct 24467948 TTTAGAAGCCAGCATCCAAGGTAAAAGAATTCTCTATTGGACTTGACATCACTCCCATTC 24468007 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 | || ||||| || || | || || || || ||||| |||||||||| || ||||| | Sbjct 24468008 TCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGCAATATTCT 24468067 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789 |||| || ||||| ||||| || | | | || |||| |||| ||| || | Sbjct 24468068 CCATAAAGTCAAATGGATTTTCTACTCTGAACACCTTGCTAAAACCCAGTTCCAGCATAA 24468127 Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849 ||| || || |||||||| || || ||||| | |||||||| || || || | Sbjct 24468128 GTCTGTCAGCCACAAATTCAATGTACTGCTTCATTAACATGCAATTCATCCCAATGAGCT 24468187 Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 49909 | || || | || |||| || || || | | || || |||| | || || Sbjct 24468188 TCACAGGCAAGGCGTCAGTGAGGAACTCCTCCTGTATCCTAACAGCATTGATAATTATTT 24468247 Query 49910 ATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAAT 49969 | | || | | || |||| ||| | | ||||| ||||||| || || || | Sbjct 24468248 CTTTTACTCTCTGCTCCGACGGTTTATGTACCAGGTGTTTGAACATCAGGCAGGCAAAGT 24468307 Query 49970 CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTA 50029 | ||||| | |||||| ||||| ||||| ||||| |||||||| ||||| || ||||| | Sbjct 24468308 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCA 24468367 Query 50030 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTA 50089 | || || || || ||||| ||||| || ||||| || |||||||||||||| ||||| | Sbjct 24468368 GTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCA 24468427 Query 50090 CTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTT---- 50145 |||| |||||||| |||| | |||||||| | || || | ||| ||| | | Sbjct 24468428 CTGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGC-CTCT-TTGTCCCCAATCTAACG 24468485 Query 50146 -TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 |||||||| |||||||| || |||||||||||||||| |||||||| |||||||| Sbjct 24468486 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTAAATGGCATTGAAGAGATA 24468545 Query 50205 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 50264 | |||| || |||||||| |||||||| || | |||||||||||||| ||||| Sbjct 24468546 TTCCCTTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATG 24468605 Query 50265 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324 |||||||| ||||| || || || || |||||||| | |||||| |||||||| ||||| Sbjct 24468606 CATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCCTCTGTAATCTGAACTTC 24468665 Query 50325 TGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 50384 | | |||||| || | || |||||||| ||||| || ||||| |||||||| || || Sbjct 24468666 TTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTAGCTGCAAAGAAAGC 24468725 Query 50385 CAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATC 50444 || ||||| ||| |||| ||| || | || | || | ||| | | || || Sbjct 24468726 CAGAACATGCGATATGAAATATTTCTCATCAGGCTTCAGAGCTTCCCAGTGCTGAATGTC 24468785 Query 50445 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 50504 || || | ||| || || | | |||||||| || ||||| || || |||||||| | Sbjct 24468786 CTTGGAAAGATCCACCTCCTTGGCCGTCCAAAAGGAAGCCTCAGCTTTCTTATACATTTG 24468845 Query 50505 CCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 ||| || ||||| |||| ||| || || ||| |||| Sbjct 24468846 CCAAATATCATGGTATTCGATAGGAAAGATAGCAAA 24468881 >seq1230 Length=159902609 Score = 132 bits (146), Expect = 7e-26 Identities = 105/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| |||||||| ||||| |||||||| || || || || | Sbjct 150440333 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 150440392 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || |||||||||||||| ||||| ||||| ||||||| Sbjct 150440393 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 150440452 Query 50102 CAACAA 50107 | |||| Sbjct 150440453 CTACAA 150440458 Score = 113 bits (124), Expect = 6e-20 Identities = 101/126 (80%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||| ||| ||| |||||||| || || || || | Sbjct 150431939 CCTCATCTCTGCTAATAAGTTCATTG--AAATGTGGAGCCGGGCATCAGTCCTCGTTTCT 150431996 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || |||||||||||||| ||||| ||||| ||||||| Sbjct 150431997 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 150432056 Query 50102 CAACAA 50107 | |||| Sbjct 150432057 CTACAA 150432062 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 ||||||| |||||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 150438694 TCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 150438753 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || || || || |||||||| | ||| || |||||||| |||||| | |||||| || Sbjct 150438754 ATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 150438812 >seq702 Length=116768492 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || |||||| ||| | || || || |||||||| | Sbjct 56440509 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 56440568 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 56440569 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 56440628 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 56440629 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 56440679 Score = 113 bits (124), Expect = 6e-20 Identities = 299/451 (66%), Gaps = 27/451 (6%) Strand=Plus/Plus Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 ||||| | || || || || || || ||| | | |||||| ||||| ||| | || || Sbjct 5323674 TGTTTGACCACCAGGCAGGC-AAGTCACAGCGTAAACCCTCATCTCTGCTACTAAGCTCA 5323732 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 ||||||| ||||| |||||||| || || | || || ||||| || || || ||| | Sbjct 5323733 TTGGAAAGTGTGAGGCCGGGCATCAGTCCCCCTTTCTTGAGCCAGAACATCGATGCAGCT 5323792 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124 || || | ||||||||| ||||| |||||||||||||| || | | | | Sbjct 5323793 GAACCGGGAAAGAAGATGCCTTCCACTGCGGCAAAGGCTGCA--GCACGTTGC------- 5323843 Query 50125 GCGCTGTCATGTATCCACTTTTGAGCCCAA---TCGGCC------TTCTTTTTTACACAA 50175 | | || | ||| || || ||||||| ||||| ||| || ||| | Sbjct 5323844 GGGGTGGCCTGT-TC--CTCCCCAGCCCAACGCACGGCCCAGTCTGTCTCCTTCACATGA 5323900 Query 50176 GGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTA 50235 | ||||||||| |||||||| ||||| | | | || || ||||||| | || Sbjct 5323901 GCCATCGTTTCAATGGCATTCAAGAGCAATTCCCTGTCTTTGGGATCTTTA----ATGTG 5323956 Query 50236 TCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAG 50295 || | || |||| |||| || ||||| | ||||| ||| || | || || ||| Sbjct 5323957 TCCGT-AAGGAACTACACATCTCAGAATGTACGTTTTACGGGGCAATTGGGAAGCCATAG 5324015 Query 50296 AAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTC 50355 ||||| || || |||||| |||||| | ||| || || | | || ||||| Sbjct 5324016 AAACAGTGGGCTTCTGTAATCCTAACTTCTTGGCTAAAACGCTCCACCCAGTTGTCATTT 5324075 Query 50356 ACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386 ||| | || || || |||||||| || |||| Sbjct 5324076 ACTCTGCCATCGCTTGCTGCAAAGAAAGCCA 5324106 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| ||||| || ||||| || ||||| | Sbjct 56442963 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 56443022 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| || ||||||||||| || || ||||| || || | | |||| Sbjct 56443023 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGAGCAATAAGTAAA 56443082 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 56443083 CTGTTTCTTATACCATA 56443099 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || ||||| |||| | || Sbjct 56453965 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGT 56454024 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| |||||| | | || || |||||||| || Sbjct 56454025 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCAAGGC 56454084 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 56454085 TCCAGGTAGATAGC 56454098 >seq1231 Length=116334831 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| || Sbjct 53055245 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 53055304 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| ||||||||||| || |||||||| Sbjct 53055305 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 53055364 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| || || Sbjct 53055365 ACTACTCTTTCCCC 53055378 >seq4546 Length=144923918 Score = 89.7 bits (98), Expect = 7e-13 Identities = 247/369 (67%), Gaps = 25/369 (7%) Strand=Plus/Plus Query 47703 TCCAGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCC 47760 |||||| || ||||| ||| ||| ||||| | ||| ||| | | ||| ||||| Sbjct 18169683 TCCAGTAGAACCAAAACCTCCTGAACTCCTGTCAGTGTC--ATCCAAAACTTGAACTTCT 18169740 Query 47761 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTT 47820 || |||||||||| | || |||| | | || ||||| || || | ||| || | || Sbjct 18169741 TCTGTTTCTGGATAAAAAATCCGTTCACAAATGAGCTGCGCAATCCGATCACCTTTTTTG 18169800 Query 47821 ACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 47880 || | ||| | ||| ||| |||| || | || || | ||||| ||||||||| Sbjct 18169801 ACTTCAAACTTCTCTTTGCCAAAATTAGACAGCACAACACCAACATTTCCTCTATAATCT 18169860 Query 47881 TCGTCTATTACACCACCTCCTATATC-----AATGCCTTTTAGTGACAGTCCAGACCTAG 47935 || ||||| |||||| |||||||||| |||| ||| | || ||||| | | Sbjct 18169861 TCATCTATGACACCAGCTCCTATATCTATAAAATG--TTTGGCAGCCAAGCCAGAACGTG 18169918 Query 47936 GAGCTATTCTACCATA----GCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATT 47991 |||||| ||| || || |||| ||| | | || ||| |||||||| | Sbjct 18169919 GAGCTACTCTTCCGTAAAACCCAGA----AGGAAGAGCTATCTGAATGTCTGTCTTCA-C 18169973 Query 47992 AACTGTCTTTCTCC-TGGA-GGGATAGTATAATCGTAAGCGCTATACAAATCATATCCGG 48049 ||| |||||||| | || || || || ||||| || || || |||| ||||| || | Sbjct 18169974 AAC-CCCTTTCTCCATAGATGGTATTGTGTAATCATAGGCACTGTACAGGTCATAGCCCG 18170032 Query 48050 CAGCACCCG 48058 || ||||| Sbjct 18170033 CA--ACCCG 18170039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718199864151920