Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3640 379 2e-100 seq1230 129 6e-25 seq702 82.4 7e-11 >seq3640 Length=31815103 Score = 379 bits (420), Expect = 2e-100 Identities = 621/887 (70%), Gaps = 12/887 (1%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || |||||| | |||||||| | ||||| || |||||||||||||| || ||| Sbjct 24467992 GACATCACTCCCATTCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 24468051 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 ||||||| ||||| |||||||| |||||||||||| | | ||||| || | || Sbjct 24468052 TCCAGTGCAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAACACCTTGCTAAAA 24468111 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 || ||||| | | | ||| ||||| | ||| ||||| || || |||||| ||| Sbjct 24468112 CCCAGTTCCAGCATAAGTCTGTCAGCCACAAATTCAATGTACTGCTTCATTAACATGCAA 24468171 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 ||||| || || || || ||||| | | || | || || | | ||| ||| Sbjct 24468172 TTCATCCCAATGAGCTTCACAGGCAAGGCGTCAGTGAGGAACTCCTCCTGTATCCTAACA 24468231 Query 13806 GCCTCTTTTATAATAATTG-TAATAATCTCA--TTAGAAGGAGGATATTTTAGATGTTTA 13862 || | | ||||| ||| | || |||| | || || || | || ||||| Sbjct 24468232 GCAT---TGATAATTATTTCTTTTACTCTCTGCTCCGACGGTTTATGTACCAGGTGTTTG 24468288 Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 || || | || ||||| ||||| || | ||||||||||| ||||||||||| || ||| Sbjct 24468289 AACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAA 24468348 Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCG 13982 ||||| | || ||||||| ||||||||| || | ||| ||||||| ||||| || || Sbjct 24468349 AATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCA 24468408 Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14042 |||||||| || || || ||||||||||| |||| | ||||||||| | | || | | Sbjct 24468409 GAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCT 24468468 Query 14043 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14102 |||| | ||| | ||||| || | || || || | | || ||| |||| | Sbjct 24468469 TTGTCCCCAATCTAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTAA 24468528 Query 14103 ATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 14162 || ||||| || | ||||||| | ||||| | | | |||||| |||||||| || | Sbjct 24468529 ATGGCATTGAAGAGATATTCCCTTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGA 24468588 Query 14163 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCT 14222 |||||||||||||| || ||||||||||| || || || || ||||| || || | ||| Sbjct 24468589 CTATACATTTCAGAATGCATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCC 24468648 Query 14223 TCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282 || | || ||||| | ||||| || |||| |||||||| ||||| |||||| Sbjct 24468649 TCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCA 24468708 Query 14283 CTAGCTGCAAAAAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT 14340 ||||||||||| || ||| || ||| | || || |||| ||| ||| || || Sbjct 24468709 CTAGCTGCAAAGAAAGCCAGAACATGCGAT--ATGAAATATTTCTCATCAGGCTTCAGAG 24468766 Query 14341 TTTTCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCG 14399 || ||| | | || | ||||| |||||||| || || | | |||||||| ||| Sbjct 24468767 CTTCCCAGTGCTGA-ATGTCCTTGGAAAGATCCACCTCCTTGGCCGTCCAAAAGGAAGCC 24468825 Query 14400 ACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14446 ||||||| ||||||||| ||| || || | ||| |||||||| Sbjct 24468826 TCAGCTTTCTTATACATTTGCCAAATATCATGGTATTCGATAGGAAA 24468872 >seq1230 Length=159902609 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 150440333 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 150440392 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||||| ||||| || || |||||||| || || || ||||||||||| | Sbjct 150440393 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 150440452 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 150440453 CTACAACCCGTTCTCC 150440468 Score = 116 bits (128), Expect = 4e-21 Identities = 108/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||| | || ||||||| ||||||||| | Sbjct 150431939 CCTCATCTCTGCTAATAAGTTCATTG--AAATGTGGAGCCGGGCATCAGTCCTCGTTTCT 150431996 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||||| ||||| || || |||||||| || || || ||||||||||| | Sbjct 150431997 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 150432056 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 150432057 CTACAACCCGTTCTCC 150432072 Score = 109 bits (120), Expect = 5e-19 Identities = 109/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || |||||| | Sbjct 150442378 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATTCT 150442436 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||||| | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 150442437 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 150442496 Query 13643 CATAAAATCAAATGGATTT 13661 |||||| |||||||||||| Sbjct 150442497 CATAAAGTCAAATGGATTT 150442515 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 |||||| |||||||| || | |||||||||||||| |||||||||||||| || || || Sbjct 150438699 AATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 150438758 Query 14201 AAAACCATAAAAGCATCTAGCTTC 14224 || ||||| || || | |||||| Sbjct 150438759 GAAGCCATAGAAACAGCGAGCTTC 150438782 >seq702 Length=116768492 Score = 82.4 bits (90), Expect = 7e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || |||||||| |||||||||| |||||||| |||||||||||||| || ||| Sbjct 5323392 GATATCACTCCCATTTTCTGATATTCACCTACTCTTTTCTCAAAGAAGTTAGTGTTTCCT 5323451 Query 13626 TCCAGTGA 13633 |||||||| Sbjct 5323452 TCCAGTGA 5323459 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 13893 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13952 ||||||||||| ||| |||| || || |||| ||| | || ||||||| ||| | ||| Sbjct 5323709 CCCTCATCTCTGCTACTAAGCTCATTGGAAAGTGTGAGGCCGGGCATCAGTCCCCCTTTC 5323768 Query 13953 tttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14012 || | ||| || || | ||| ||| |||| |||||| || || || ||||| ||||| Sbjct 5323769 TTGAGCCAGAACATCGATGCAGCTGAACCGGGAAAGAAGATGCCTTCCACTGCGGCAAAG 5323828 Query 14013 GCT 14015 ||| Sbjct 5323829 GCT 5323831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479681958105200