Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3640 361 5e-95 seq1230 123 2e-23 >seq3640 Length=31815103 Score = 361 bits (400), Expect = 5e-95 Identities = 617/887 (70%), Gaps = 12/887 (1%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || |||||| | |||||||| | ||||| || ||||| |||||||| || ||| Sbjct 24467992 GACATCACTCCCATTCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 24468051 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 ||||||| ||||| |||||||| || ||||||||| | | ||||| || | || Sbjct 24468052 TCCAGTGCAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAACACCTTGCTAAAA 24468111 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 || ||||| | | | ||| ||||| | ||| ||||| || || |||||| ||| Sbjct 24468112 CCCAGTTCCAGCATAAGTCTGTCAGCCACAAATTCAATGTACTGCTTCATTAACATGCAA 24468171 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 ||||| || || || || ||||| | | ||| | || || | | ||| ||| Sbjct 24468172 TTCATCCCAATGAGCTTCACAGGCAAGGCGTCAGTGAGGAACTCCTCCTGTATCCTAACA 24468231 Query 13594 GCCTCGTTTATAATAATCTTAATAATGTCA--TTAGAAGGAGGATATTTTAGATGTTTAA 13651 || | | | || || |||| || | || | || || || | || ||||| | Sbjct 24468232 GCATTGATAATTATT-TCTTT-TACTCTCTGCTCCGACGGTTTATGTACCAGGTGTTTGA 24468289 Query 13652 AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAA 13711 | || | || ||||| ||||| || | ||||||||||| ||||||||||| || |||| Sbjct 24468290 ACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAA 24468349 Query 13712 ATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGG 13771 |||| | || ||||||| ||||||||| || | ||| ||||||| || || || || | Sbjct 24468350 ATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAG 24468409 Query 13772 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTT 13831 ||||||| || || || ||||||||||| |||| | ||||||||| | | || | || Sbjct 24468410 AAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTT 24468469 Query 13832 TGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGA 13891 ||| ||| | ||||| || | || || || | | || ||| |||| | Sbjct 24468470 TGTCCCCAATCTAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTAAA 24468529 Query 13892 TTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGC 13951 | |||||||| | || |||| | ||||| | | | |||||| |||||||| || | | Sbjct 24468530 TGGCATTGAAGAGATATTCCCTTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGAC 24468589 Query 13952 TATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14011 ||||||||||||| || |||||||| || || || || || ||||| ||||| | ||| | Sbjct 24468590 TATACATTTCAGAATGCATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCCT 24468649 Query 14012 CTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCAC 14071 ||| || || || | ||||| || ||||||||||||| || || ||||||| Sbjct 24468650 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 24468709 Query 14072 TAGCTGCAAAAAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT 14129 |||||||||| || ||| || ||| | || || |||| ||| ||| || || Sbjct 24468710 TAGCTGCAAAGAAAGCCAGAACATGCGAT--ATGAAATATTTCTCATCAGGCTTCAGAGC 24468767 Query 14130 TTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCG 14187 || ||| | ||| || ||||| |||||||| || || | | |||||||| ||| Sbjct 24468768 TTCCCAGT--GCTGAATGTCCTTGGAAAGATCCACCTCCTTGGCCGTCCAAAAGGAAGCC 24468825 Query 14188 ACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14234 ||||||| ||||||||| ||| || || | ||| |||||||| Sbjct 24468826 TCAGCTTTCTTATACATTTGCCAAATATCATGGTATTCGATAGGAAA 24468872 >seq1230 Length=159902609 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 150440333 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 150440392 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||||| || || || || |||||||| || || || ||||||||||| | Sbjct 150440393 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 150440452 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 150440453 CTACAACCCGTTCTCC 150440468 Score = 113 bits (124), Expect = 4e-20 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||| | || ||||||| ||||||||| | Sbjct 150431939 CCTCATCTCTGCTAATAAGTTCATTG--AAATGTGGAGCCGGGCATCAGTCCTCGTTTCT 150431996 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||||| || || || || |||||||| || || || ||||||||||| | Sbjct 150431997 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 150432056 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 150432057 CTACAACCCGTTCTCC 150432072 Score = 100 bits (110), Expect = 3e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || |||||| | Sbjct 150442378 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATTCT 150442436 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||||| | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 150442437 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 150442496 Query 13431 CATAAAATCGAATGGATTT 13449 |||||| || ||||||||| Sbjct 150442497 CATAAAGTCAAATGGATTT 150442515 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 |||||| |||||||| || | |||||||||||||| ||||||||||| || || || || Sbjct 150438699 AATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 150438758 Query 13989 AAAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | |||||||| Sbjct 150438759 GAAGCCATAGAAACAGCGAGCTTCTG 150438784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478542867439920