Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq233 96.9 4e-15 seq2763 91.5 1e-13 seq3640 84.2 2e-11 >seq1 Length=114275543 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030 ||| || | ||||| || || || ||||| |||||||| || || || | || | | Sbjct 8597706 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 8597648 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| ||||| || |||||| | ||||| | ||||||||| ||||| || ||||| || | Sbjct 8597647 CTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTAT 8597588 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | || || |||| | ||| | || |||| |||||| ||||||| ||| | | Sbjct 8597587 CCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACTTCAAGAGTGATAG 8597528 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || | ||||||||||| || ||||| Sbjct 8597527 TTTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 8597494 >seq233 Length=141296404 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030 ||| || | ||||| || || || || || |||||||| || || || | || | | Sbjct 109921676 CAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 109921734 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| ||||| || |||||| | ||||| | ||||||||| ||||| || |||||||| | Sbjct 109921735 CTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTAT 109921794 Query 143091 C--GGTAATTTTTTGT--TTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 | || | | ||| |||| | ||| | || |||| |||||| || || | ||| Sbjct 109921795 CCTGGCCTTATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCCAGAGTG 109921854 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | ||||| || || | ||||||||||| || ||||| Sbjct 109921855 ATAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 109921892 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| ||||| || |||||| | ||||| | ||||||||| ||||| || ||||| || Sbjct 108315037 TCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTA 108314978 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || |||| | ||| | || |||| |||||| || || | ||| | Sbjct 108314977 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATA 108314918 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || || | ||||||||||| || ||||| Sbjct 108314917 GTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 108314883 >seq2763 Length=65901067 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030 ||| || | ||||| || || || ||||| |||||||| || || || | || | | Sbjct 824243 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 824301 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| ||||| || |||||| | ||||| | ||||||||| ||||| || ||||| || | Sbjct 824302 CTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTAT 824361 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | || || |||| | ||| | || |||| |||||| || || | || | | Sbjct 824362 CCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGGGATAG 824421 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || || ||||||||||| || ||||| Sbjct 824422 TCTTTCCTGTACGGGTTTTTACGAAAATCTGCAT 824455 >seq3640 Length=31815103 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | || |||| || || || | || || ||||| || |||||||| || Sbjct 21636582 CCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 21636523 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | ||||| || || || || ||| ||||||| | |||||||| ||||| Sbjct 21636522 AGGGTGCGTCCA-TCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGATCAGGAGG 21636464 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || ||| || | | || | ||||| |||| || || Sbjct 21636463 GATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCAC 21636404 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||||| || || || || || ||||| Sbjct 21636403 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 21636356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506965739292960